{ "type": "genome", "identifier": "GCF_000354175.2", "organism": "Vibrio alginolyticus NBRC 15630 = ATCC 17749", "title": "Vibrio alginolyticus NBRC 15630 = ATCC 17749", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Jinan Military General Hospital", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000354175.2", "bioproject": "PRJNA224116", "biosample": "SAMN02603463", "wgs_master": "na", "refseq_category": "na", "taxid": "1219076", "species_taxid": "663", "organism_name": "Vibrio alginolyticus NBRC 15630 = ATCC 17749", "infraspecific_name": "strain=ATCC 17749", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/09/10", "asm_name": "ASM35417v2", "asm_submitter": "Jinan Military General Hospital", "gbrs_paired_asm": "GCA_000354175.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/354/175/GCF_000354175.2_ASM35417v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5146637", "genome_size_ungapped": "5146637", "gc_percent": "44.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000354175.2-RS_2024_12_10", "annotation_date": "2024-12-10", "total_gene_count": "4661", "protein_coding_gene_count": "4467", "non_coding_gene_count": "143", "pubmed_id": "25635021" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-09-10", "dateModified": "2013-09-10", "datePublished": "2013-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio alginolyticus NBRC 15630 = ATCC 17749" ], "sample_taxid": [ "1219076" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.461 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5146637", "Number of Sequences": "2", "Longest Sequences (bp)": "3334467", "N50 (bp)": "3334467", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.7", "Number of CDSs": "4542", "Average Protein Length": "323.0", "Coding Ratio (%)": "85.5", "Number of rRNAs": "34", "Number of tRNAs": "105", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio alginolyticus", "strain": "strain=ATCC 17749", "accession": "GCA_000354175.2", "taxid": 663, "species_taxid": 663, 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"total_fragments": 1715, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio antiquarius", "strain": "strain=EX25", "accession": "GCA_000024825.1", "taxid": 150340, "species_taxid": 150340, "relation_to_type": "suspected-type", "validated": true, "ani": 92.6568, "matched_fragments": 1483, "total_fragments": 1715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio antiquarius", "strain": "strain=EX25", "accession": "GCA_000152485.1", "taxid": 150340, "species_taxid": 150340, "relation_to_type": "suspected-type", "validated": true, "ani": 92.3277, "matched_fragments": 1370, "total_fragments": 1715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio parahaemolyticus", "strain": "strain=NCTC10903", "accession": "GCA_900460535.1", "taxid": 670, "species_taxid": 670, "relation_to_type": "type", "validated": true, "ani": 86.2762, "matched_fragments": 1242, "total_fragments": 1715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio natriegens", "strain": "strain=14048", "accession": "GCA_024508015.1", "taxid": 691, "species_taxid": 691, "relation_to_type": "type", "validated": true, "ani": 82.9876, "matched_fragments": 912, "total_fragments": 1715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio pelagius", "strain": "strain=ATCC 25916", "accession": "GCA_024347575.1", "taxid": 28169, "species_taxid": 28169, "relation_to_type": "type", "validated": true, "ani": 80.8632, "matched_fragments": 460, "total_fragments": 1715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=JCM 19500", "accession": "GCA_009938205.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 80.656, "matched_fragments": 400, "total_fragments": 1715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio fortis", "strain": "strain=LMG 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