{ "type": "genome", "identifier": "GCF_000355905.1", "organism": "Psychroflexus gondwanensis ACAM 44", "title": "Psychroflexus gondwanensis ACAM 44", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Tasmania", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000355905.1", "bioproject": "PRJNA224116", "biosample": "SAMN02471957", "wgs_master": "APLF00000000.1", "refseq_category": "reference genome", "taxid": "1189619", "species_taxid": "251", "organism_name": "Psychroflexus gondwanensis ACAM 44", "infraspecific_name": "strain=ACAM 44", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/08", "asm_name": "Pgondw1.0", "asm_submitter": "University of Tasmania", "gbrs_paired_asm": "GCA_000355905.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/355/905/GCF_000355905.1_Pgondw1.0", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3311768", "genome_size_ungapped": "3311768", "gc_percent": "36.000000", "replicon_count": "0", "scaffold_count": "62", "contig_count": "62", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000355905.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3023", "protein_coding_gene_count": "2937", "non_coding_gene_count": "50", "pubmed_id": "24391155" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-08", "dateModified": "2013-04-08", "datePublished": "2013-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Psychroflexus gondwanensis ACAM 44" ], "sample_taxid": [ "1189619" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica: Vesthold Hills" ], "sample_host_location_id": [], "data_size": "0.932 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3311768", "Number of Sequences": "62", "Longest Sequences (bp)": "412604", "N50 (bp)": "290486", "Gap Ratio (%)": "0.000091", "GCcontent (%)": "35.8", "Number of CDSs": "2918", "Average Protein Length": "327.1", "Coding Ratio (%)": "86.5", "Number of rRNAs": "9", "Number of tRNAs": "36", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Psychroflexus gondwanensis", "strain": "strain=ACAM 44", "accession": "GCA_000355905.1", "taxid": 251, "species_taxid": 251, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1072, "total_fragments": 1075, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Psychroflexus torquis", "strain": "strain=ATCC 700755", "accession": "GCA_000153485.2", "taxid": 57029, "species_taxid": 57029, "relation_to_type": "type", "validated": true, "ani": 90.5529, "matched_fragments": 899, "total_fragments": 1075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroflexus lacisalsi", "strain": "strain=KACC 14089", "accession": "GCA_020164495.1", "taxid": 503928, "species_taxid": 503928, "relation_to_type": "type", "validated": true, "ani": 81.4536, "matched_fragments": 424, "total_fragments": 1075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroflexus sediminis", "strain": "strain=DSM 19803", "accession": "GCA_900099815.1", "taxid": 470826, "species_taxid": 470826, "relation_to_type": "type", "validated": true, "ani": 78.0091, "matched_fragments": 315, "total_fragments": 1075, "ani_threshold": 95, 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Psychroflexus", "gondwanensis", "ACAM", "44" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }