{ "type": "genome", "identifier": "GCF_000359745.1", "organism": "Rhizobium freirei PRF 81", "title": "Rhizobium freirei PRF 81", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Embrapa", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000359745.1", "bioproject": "PRJNA224116", "biosample": "SAMN02470251", "wgs_master": "AQHN00000000.1", "refseq_category": "reference genome", "taxid": "363754", "species_taxid": "1353277", "organism_name": "Rhizobium freirei PRF 81", "infraspecific_name": "strain=PRF 81", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/10", "asm_name": "Rhizobium sp.", "asm_submitter": "Embrapa", "gbrs_paired_asm": "GCA_000359745.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/359/745/GCF_000359745.1_Rhizobium_sp.", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7083871", "genome_size_ungapped": "7083871", "gc_percent": "60.000000", "replicon_count": "2", "scaffold_count": "96", "contig_count": "96", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000359745.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "6703", "protein_coding_gene_count": "6468", "non_coding_gene_count": "65", "pubmed_id": "23270491" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-10", "dateModified": "2013-04-10", "datePublished": "2013-04-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhizobium freirei PRF 81" ], "sample_taxid": [ "363754" ], "sample_host_organism": [ "Phaseolus vulgaris L." ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Irati county, State of Parana" ], "sample_host_location_id": [], "data_size": "1.990 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7083871", "Number of Sequences": "96", "Longest Sequences (bp)": "604001", "N50 (bp)": "246360", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.9", "Number of CDSs": "6682", "Average Protein Length": "302.9", "Coding Ratio (%)": "85.7", "Number of rRNAs": "9", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhizobium freirei", "strain": "strain=PRF 81", "accession": "GCA_000359745.1", "taxid": 1353277, "species_taxid": 1353277, "relation_to_type": "type", "validated": true, "ani": 100.0, 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