{
    "type": "genome",
    "identifier": "GCF_000365305.1",
    "organism": "Dickeya dianthicola NCPPB 453",
    "title": "Dickeya dianthicola NCPPB 453",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "James Hutton Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000365305.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02470095",
        "wgs_master": "AOOB00000000.1",
        "refseq_category": "na",
        "taxid": "1223568",
        "species_taxid": "204039",
        "organism_name": "Dickeya dianthicola NCPPB 453",
        "infraspecific_name": "strain=NCPPB 453",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Chromosome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/05/07",
        "asm_name": "DDI453_v1.0",
        "asm_submitter": "James Hutton Institute",
        "gbrs_paired_asm": "GCA_000365305.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/365/305/GCF_000365305.1_DDI453_v1.0",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4676060",
        "genome_size_ungapped": "4671960",
        "gc_percent": "56.000000",
        "replicon_count": "1",
        "scaffold_count": "11",
        "contig_count": "52",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000365305.1-RS_2024_12_16",
        "annotation_date": "2024-12-16",
        "total_gene_count": "4235",
        "protein_coding_gene_count": "4041",
        "non_coding_gene_count": "71",
        "pubmed_id": "23887905"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-05-07",
    "dateModified": "2013-05-07",
    "datePublished": "2013-05-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Dickeya dianthicola NCPPB 453"
        ],
        "sample_taxid": [
            "1223568"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.316 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 98.44,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4676060",
        "Number of Sequences": "11",
        "Longest Sequences (bp)": "4652956",
        "N50 (bp)": "4652956",
        "Gap Ratio (%)": "0.087681",
        "GCcontent (%)": "56.0",
        "Number of CDSs": "4153",
        "Average Protein Length": "320.5",
        "Coding Ratio (%)": "85.4",
        "Number of rRNAs": "2",
        "Number of tRNAs": "64",
        "Number of CRISPRs": "9"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1554,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Dickeya dadantii subsp. dieffenbachiae",
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                "accession": "GCA_000406185.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 92.2985,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dickeya solani",
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            },
            {
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                "ani_threshold": 95,
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            },
            {
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dickeya fangzhongdai",
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                "accession": "GCA_002812485.1",
                "taxid": 1778540,
                "species_taxid": 1778540,
                "relation_to_type": "type",
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            {
                "organism_name": "Dickeya fangzhongdai",
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                "accession": "GCA_014642955.1",
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            },
            {
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            },
            {
                "organism_name": "Musicola keenii",
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                "accession": "GCA_022761095.1",
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                "validated": true,
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                "matched_fragments": 847,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cronobacter sakazakii",
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                "species_taxid": 28141,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter hormaechei",
                "strain": "strain=FDAARGOS 1433",
                "accession": "GCA_019048245.1",
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                "species_taxid": 158836,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter wuhouensis",
                "strain": "strain=WCHEW120002",
                "accession": "GCA_004331265.1",
                "taxid": 2529381,
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                "relation_to_type": "type",
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                "matched_fragments": 423,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pantoea deleyi",
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                "accession": "GCA_022647325.1",
                "taxid": 470932,
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            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_000365305.1",
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                "total_fragments": 1554,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Dickeya",
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            },
            {
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "dianthicola",
        "NCPPB",
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}