{ "type": "genome", "identifier": "GCF_000367325.1", "organism": "Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535", "title": "Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000367325.1", "bioproject": "PRJNA224116", "biosample": "SAMD00041814", "wgs_master": "BARD00000000.1", "refseq_category": "na", "taxid": "1216967", "species_taxid": "238", "organism_name": "Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535", "infraspecific_name": "strain=NBRC 12535", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/12", "asm_name": "ASM36732v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000367325.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/367/325/GCF_000367325.1_ASM36732v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3840286", "genome_size_ungapped": "3840286", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "34", "contig_count": "34", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000367325.1-RS_2024_08_09", "annotation_date": "2024-08-09", "total_gene_count": "3468", "protein_coding_gene_count": "3403", "non_coding_gene_count": "44", "pubmed_id": "23846266" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-12", "dateModified": "2013-04-12", "datePublished": "2013-04-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535" ], "sample_taxid": [ "1216967" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.080 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3840286", "Number of Sequences": "34", "Longest Sequences (bp)": "557384", "N50 (bp)": "248179", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.4", "Number of CDSs": "3396", "Average Protein Length": "328.9", "Coding Ratio (%)": "87.2", "Number of rRNAs": "3", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Elizabethkingia meningoseptica", "strain": "strain=NBRC 12535", "accession": "GCA_000367325.1", 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"validated": true, "ani": 81.8419, "matched_fragments": 803, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Elizabethkingia occulta", "strain": "strain=G4070", "accession": "GCA_002023715.1", "taxid": 1867263, "species_taxid": 1867263, "relation_to_type": "type", "validated": true, "ani": 81.7623, "matched_fragments": 812, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Elizabethkingia ursingii", "strain": "strain=G4122", "accession": "GCA_001521765.1", "taxid": 1756150, "species_taxid": 1756150, "relation_to_type": "type", "validated": true, "ani": 81.7397, "matched_fragments": 834, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Elizabethkingia miricola", "strain": "strain=GTC_862", "accession": "GCA_001675285.1", "taxid": 172045, "species_taxid": 172045, "relation_to_type": "type", "validated": true, "ani": 81.7388, "matched_fragments": 817, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Elizabethkingia miricola", "strain": "strain=DSM 14571", "accession": "GCA_008124555.1", "taxid": 172045, "species_taxid": 172045, "relation_to_type": "type", "validated": true, "ani": 81.7326, "matched_fragments": 823, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium camelliae", "strain": "strain=Dolsongi-HT1", "accession": "GCA_002770595.1", "taxid": 1265445, "species_taxid": 1265445, "relation_to_type": "type", "validated": true, "ani": 77.4859, "matched_fragments": 133, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium soldanellicola", "strain": "strain=DSM 17072", "accession": "GCA_900100115.1", "taxid": 311333, "species_taxid": 311333, "relation_to_type": "type", "validated": true, "ani": 77.1122, "matched_fragments": 178, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium faecale", "strain": "strain=F4", "accession": "GCA_020985365.1", "taxid": 2852098, "species_taxid": 2852098, "relation_to_type": "type", "validated": true, "ani": 77.0832, "matched_fragments": 101, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium faecale", "strain": "strain=F4", "accession": "GCA_019195395.1", "taxid": 2852098, "species_taxid": 2852098, "relation_to_type": "type", "validated": true, "ani": 77.0832, "matched_fragments": 101, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ginsenosidimutans", "strain": "strain=THG 15", "accession": "GCA_024807225.1", "taxid": 687846, "species_taxid": 687846, "relation_to_type": "type", "validated": true, "ani": 76.9084, "matched_fragments": 197, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistella daneshvariae", "strain": "strain=H3001", "accession": "GCA_003860505.1", "taxid": 2487074, "species_taxid": 2487074, "relation_to_type": "type", "validated": true, "ani": 76.8735, "matched_fragments": 70, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 75.1593, "matched_fragments": 54, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000367325.1", "gtdb_species": "s__Elizabethkingia meningoseptica", "ani": 100.0, "matched_fragments": 1264, "total_fragments": 1265, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Elizabethkingia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.78", "min_intra_species_ani": "98.42", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 51, "status": "conclusive" }, { "accession": "GCF_002023665.2", "gtdb_species": "s__Elizabethkingia anophelis", "ani": 81.7842, "matched_fragments": 814, "total_fragments": 1265, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Elizabethkingia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.27", "min_intra_species_ani": "97.37", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.86", "num_clustered_genomes": 104, "status": "-" }, { "accession": "GCF_002023715.1", "gtdb_species": "s__Elizabethkingia occulta", "ani": 81.7533, "matched_fragments": 813, "total_fragments": 1265, "gtdb_taxonomy": 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0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Elizabethkingia", "meningoseptica", "ATCC", "13253", "=", "NBRC", "12535" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }