{ "type": "genome", "identifier": "GCF_000367365.1", "organism": "Streptomyces prunicolor NBRC 13075", "title": "Streptomyces prunicolor NBRC 13075", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000367365.1", "bioproject": "PRJNA224116", "biosample": "SAMD00041815", "wgs_master": "BARF00000000.1", "refseq_category": "na", "taxid": "1312234", "species_taxid": "67348", "organism_name": "Streptomyces prunicolor NBRC 13075", "infraspecific_name": "strain=NBRC 13075", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/12", "asm_name": "ASM36736v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000367365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/367/365/GCF_000367365.1_ASM36736v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "11760649", "genome_size_ungapped": "11760649", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "202", "contig_count": "202", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000367365.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "10943", "protein_coding_gene_count": "10625", "non_coding_gene_count": "84", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-12", "dateModified": "2013-04-12", "datePublished": "2013-04-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces prunicolor NBRC 13075" ], "sample_taxid": [ "1312234" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "3.200 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.08, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "11760649", "Number of Sequences": "202", "Longest Sequences (bp)": "451240", "N50 (bp)": "124739", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.7", "Number of CDSs": "10923", "Average Protein Length": "315.3", "Coding Ratio (%)": "87.9", "Number of rRNAs": "2", "Number of tRNAs": "90", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces prunicolor", "strain": "strain=NBRC 13075", "accession": "GCA_000367365.1", "taxid": 67348, "species_taxid": 67348, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3800, "total_fragments": 3815, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces hokutonensis", "strain": "strain=R1-NS-10", "accession": "GCA_000376565.1", "taxid": 1306990, "species_taxid": 1306990, "relation_to_type": "type", "validated": true, "ani": 91.2353, "matched_fragments": 2713, "total_fragments": 3815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces justiciae", "strain": "strain=3R004", "accession": "GCA_015163075.1", "taxid": 2780140, "species_taxid": 2780140, "relation_to_type": "type", "validated": true, "ani": 85.1307, "matched_fragments": 2117, "total_fragments": 3815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces plumbidurans", "strain": "strain=KC 17012", "accession": "GCA_019857225.1", "taxid": 2814589, "species_taxid": 2814589, "relation_to_type": "type", "validated": true, "ani": 84.8545, "matched_fragments": 1927, "total_fragments": 3815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces panaciradicis", "strain": "strain=NBRC 109811", "accession": "GCA_023516615.1", "taxid": 1470261, "species_taxid": 1470261, "relation_to_type": "type", "validated": true, "ani": 84.7891, "matched_fragments": 1955, "total_fragments": 3815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces hyaluromycini", "strain": "strain=NBRC 110483", "accession": "GCA_002217755.1", "taxid": 1377993, "species_taxid": 1377993, "relation_to_type": "type", "validated": true, "ani": 84.7145, "matched_fragments": 2332, "total_fragments": 3815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces curacoi", "strain": "strain=DSM 40107", "accession": "GCA_001513975.1", "taxid": 146536, "species_taxid": 146536, "relation_to_type": "type", "validated": true, "ani": 84.6436, "matched_fragments": 1921, "total_fragments": 3815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces blattellae", "strain": "strain=TRM63209", "accession": "GCA_009709555.1", "taxid": 2569855, "species_taxid": 2569855, "relation_to_type": "type", "validated": true, "ani": 84.6217, "matched_fragments": 1781, "total_fragments": 3815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cyaneochromogenes", "strain": "strain=MK-45", "accession": "GCA_003963535.1", "taxid": 2496836, "species_taxid": 2496836, "relation_to_type": "type", "validated": true, "ani": 84.4241, "matched_fragments": 2094, "total_fragments": 3815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces davaonensis", "strain": "strain=JCM 4913", "accession": "GCA_000349325.1", "taxid": 348043, "species_taxid": 348043, "relation_to_type": "type", "validated": true, "ani": 84.4118, "matched_fragments": 1904, "total_fragments": 3815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces phaeofaciens", "strain": "strain=JCM 4125", "accession": "GCA_014648915.1", "taxid": 68254, "species_taxid": 68254, "relation_to_type": "type", "validated": true, "ani": 84.3782, "matched_fragments": 2007, "total_fragments": 3815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces brasiliensis", "strain": "strain=JCM 3086", "accession": "GCA_014647875.1", "taxid": 1954, "species_taxid": 1954, "relation_to_type": "type", "validated": true, "ani": 84.3381, "matched_fragments": 1879, "total_fragments": 3815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces avermitilis", "strain": "strain=MA-4680", "accession": "GCA_000009765.2", "taxid": 33903, "species_taxid": 33903, "relation_to_type": "type", "validated": true, "ani": 84.2468, "matched_fragments": 1898, "total_fragments": 3815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces violarus", "strain": "strain=CECT 3237", "accession": "GCA_014191845.1", "taxid": 67380, "species_taxid": 67380, "relation_to_type": "type", "validated": true, "ani": 84.2381, "matched_fragments": 1908, "total_fragments": 3815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces violarus", "strain": "strain=JCM 4534", "accession": "GCA_014650255.1", "taxid": 67380, "species_taxid": 67380, "relation_to_type": "type", "validated": true, "ani": 84.2346, "matched_fragments": 1905, "total_fragments": 3815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces avermitilis", "strain": "strain=DSM 46492", "accession": "GCA_001514135.1", "taxid": 33903, "species_taxid": 33903, "relation_to_type": "type", "validated": true, "ani": 84.2267, "matched_fragments": 1888, "total_fragments": 3815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lanatus", "strain": "strain=JCM 4588", "accession": "GCA_014655715.1", "taxid": 66900, "species_taxid": 66900, "relation_to_type": "type", "validated": true, "ani": 84.1762, "matched_fragments": 2043, "total_fragments": 3815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces avermitilis", "strain": "strain=NBRC 14893", "accession": "GCA_005405965.1", "taxid": 33903, "species_taxid": 33903, "relation_to_type": "type", "validated": true, "ani": 84.0209, "matched_fragments": 2001, "total_fragments": 3815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces phaeochromogenes", "strain": "strain=NRRL B-1248", "accession": "GCA_001418655.1", "taxid": 1923, "species_taxid": 1923, "relation_to_type": "type", "validated": true, "ani": 83.916, "matched_fragments": 1934, "total_fragments": 3815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces asoensis", "strain": "strain=JCM 4185", "accession": "GCA_014649075.1", "taxid": 249586, "species_taxid": 249586, "relation_to_type": "type", "validated": true, "ani": 83.8888, "matched_fragments": 1935, "total_fragments": 3815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces asoensis", "strain": "strain=NBRC 13813", "accession": "GCA_016860545.1", "taxid": 249586, "species_taxid": 249586, "relation_to_type": "type", "validated": true, "ani": 83.8546, "matched_fragments": 1936, "total_fragments": 3815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseostramineus", "strain": "strain=CECT 3273", "accession": "GCA_014203535.1", "taxid": 66898, "species_taxid": 66898, "relation_to_type": "suspected-type", "validated": true, "ani": 83.6356, "matched_fragments": 1675, "total_fragments": 3815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces deccanensis", "strain": "strain=KCTC 19241", "accession": "GCA_022385335.1", "taxid": 424188, "species_taxid": 424188, "relation_to_type": "type", "validated": true, "ani": 83.2048, "matched_fragments": 1924, "total_fragments": 3815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces bauhiniae", "strain": "strain=Bv016", "accession": "GCA_004784475.1", "taxid": 2340725, "species_taxid": 2340725, "relation_to_type": "type", "validated": true, "ani": 83.0904, "matched_fragments": 1501, "total_fragments": 3815, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 2.08, "strain_heterogeneity": 50.0 }, "gtdb_result": [ { "accession": "GCF_000367365.1", "gtdb_species": "s__Streptomyces prunicolor", "ani": 100.0, "matched_fragments": 3800, "total_fragments": 3815, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000716605.1", "gtdb_species": "s__Streptomyces sp000716605", "ani": 93.4146, "matched_fragments": 2775, "total_fragments": 3815, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016612545.1", "gtdb_species": "s__Streptomyces sp016612545", "ani": 92.2216, "matched_fragments": 2445, "total_fragments": 3815, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000716435.1", "gtdb_species": "s__Streptomyces xylophagus", "ani": 92.2188, "matched_fragments": 2749, "total_fragments": 3815, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000376565.1", "gtdb_species": "s__Streptomyces hokutonensis", "ani": 91.2279, "matched_fragments": 2713, "total_fragments": 3815, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.37", "min_intra_species_ani": "96.37", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.82", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_016654115.1", "gtdb_species": "s__Streptomyces sp016654115", "ani": 91.0538, "matched_fragments": 2526, "total_fragments": 3815, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.80", "min_intra_species_ani": "98.80", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000721105.1", "gtdb_species": "s__Streptomyces cellulosae_A", "ani": 84.7969, "matched_fragments": 1981, "total_fragments": 3815, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 96.8346, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.201, "cell_length": -0.05, "doubling_h": 0.103, "growth_tmp": 27.0, "optimum_tmp": 29.036, "optimum_ph": 7.341, "genome_size": 11760649.0, "gc_content": 69.7, "coding_genes": 7141.289, "rRNA16S_genes": 6.155, "tRNA_genes": 67.804, "gram_stain": 1.0, "sporulation": 0.958, "motility": 0.049, "range_salinity": 0.666, "facultative_respiration": 0.0, "anaerobic_respiration": 0.005, "aerobic_respiration": 0.994, "mesophilic_range_tmp": 0.98, "thermophilic_range_tmp": 0.019, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.208, "coccus_cell_shape": 0.032, "filament_cell_shape": 0.582, "coccobacillus_cell_shape": 0.098, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.076 }, "_genome_taxon": [ "Streptomyces", "prunicolor", "NBRC", "13075" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }