{ "type": "genome", "identifier": "GCF_000367965.1", "organism": "Acinetobacter modestus", "title": "Acinetobacter modestus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Broad Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000367965.1", "bioproject": "PRJNA224116", "biosample": "SAMN01828190", "wgs_master": "APOJ00000000.1", "refseq_category": "reference genome", "taxid": "1776740", "species_taxid": "1776740", "organism_name": "Acinetobacter modestus", "infraspecific_name": "strain=NIPH 236", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/19", "asm_name": "Acin_sp_NIPH_236_V1", "asm_submitter": "Broad Institute", "gbrs_paired_asm": "GCA_000367965.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/367/965/GCF_000367965.1_Acin_sp_NIPH_236_V1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3544061", "genome_size_ungapped": "3538151", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "19", "contig_count": "32", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000367965.1-RS_2024_05_13", "annotation_date": "2024-05-13", "total_gene_count": "3434", "protein_coding_gene_count": "3276", "non_coding_gene_count": "99", "pubmed_id": "26822020" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-19", "dateModified": "2013-04-19", "datePublished": "2013-04-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter modestus" ], "sample_taxid": [ "1776740" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic: Pribram" ], "sample_host_location_id": [], "data_size": "1.000 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3544061", "Number of Sequences": "19", "Longest Sequences (bp)": "1965408", "N50 (bp)": "1965408", "Gap Ratio (%)": "0.166758", "GCcontent (%)": "38.4", "Number of CDSs": "3324", "Average Protein Length": "308.0", "Coding Ratio (%)": "86.7", "Number of rRNAs": "11", "Number of tRNAs": "78", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter modestus", "strain": "strain=CCM 8639", "accession": "GCA_014636095.1", "taxid": 1776740, "species_taxid": 1776740, "relation_to_type": "type", "validated": true, "ani": 99.9879, "matched_fragments": 1160, "total_fragments": 1172, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter tjernbergiae", "strain": "strain=DSM 14971", "accession": "GCA_000759995.1", "taxid": 202955, "species_taxid": 202955, "relation_to_type": "type", "validated": true, "ani": 88.1071, "matched_fragments": 926, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter tjernbergiae", "strain": "strain=DSM 14971", "accession": "GCA_000374425.1", "taxid": 202955, "species_taxid": 202955, "relation_to_type": "type", "validated": true, "ani": 88.0215, "matched_fragments": 937, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter tjernbergiae", "strain": "strain=CIP 107465", "accession": "GCA_000488175.1", "taxid": 202955, "species_taxid": 202955, "relation_to_type": "type", "validated": true, "ani": 87.9832, "matched_fragments": 925, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter parvus", "strain": "strain=CIP 108168", "accession": "GCA_000368025.1", "taxid": 134533, "species_taxid": 134533, "relation_to_type": "type", "validated": true, "ani": 85.6333, "matched_fragments": 661, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter parvus", "strain": "strain=DSM 16617", "accession": "GCA_000248155.2", "taxid": 134533, "species_taxid": 134533, "relation_to_type": "type", "validated": true, "ani": 85.5649, "matched_fragments": 631, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter proteolyticus", "strain": "strain=NIPH 809", "accession": "GCA_000367945.1", "taxid": 1776741, "species_taxid": 1776741, "relation_to_type": "type", "validated": true, "ani": 84.4918, "matched_fragments": 833, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gyllenbergii", "strain": "strain=CIP 110306", "accession": "GCA_000413855.1", "taxid": 134534, "species_taxid": 134534, "relation_to_type": "type", "validated": true, "ani": 84.4904, "matched_fragments": 795, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gyllenbergii", "strain": "strain=MTCC 11365", "accession": "GCA_000414075.1", "taxid": 134534, "species_taxid": 134534, "relation_to_type": "type", "validated": true, "ani": 84.4701, "matched_fragments": 791, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter colistiniresistens", "strain": "strain=NIPH 2036", "accession": "GCA_000413935.1", "taxid": 280145, "species_taxid": 280145, "relation_to_type": "type", "validated": true, "ani": 84.1219, "matched_fragments": 785, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter junii", "strain": "strain=CIP 64.5", "accession": "GCA_000368765.1", "taxid": 40215, "species_taxid": 40215, "relation_to_type": "type", "validated": true, "ani": 84.1094, "matched_fragments": 750, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter junii", "strain": "strain=NCTC10307", "accession": "GCA_900444875.1", "taxid": 40215, "species_taxid": 40215, "relation_to_type": "type", "validated": true, "ani": 84.0154, "matched_fragments": 741, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter vivianii", "strain": "strain=CCM 8642", "accession": "GCA_014635885.1", "taxid": 1776742, "species_taxid": 1776742, "relation_to_type": "type", "validated": true, "ani": 83.6209, "matched_fragments": 749, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter venetianus", "strain": "strain=RAG-1", "accession": "GCA_000271425.1", "taxid": 52133, "species_taxid": 52133, "relation_to_type": "type", "validated": true, "ani": 83.4822, "matched_fragments": 784, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter haemolyticus", "strain": "strain=NCTC10305", "accession": "GCA_900444835.1", "taxid": 29430, "species_taxid": 29430, "relation_to_type": "type", "validated": true, "ani": 82.925, "matched_fragments": 696, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pittii", "strain": "strain=CIP70.29", "accession": "GCA_024390955.1", "taxid": 48296, "species_taxid": 48296, "relation_to_type": "type", "validated": true, "ani": 80.358, "matched_fragments": 477, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=PartI-Abaumannii-RM8376", "accession": "GCA_022870045.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 80.3568, "matched_fragments": 496, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=ATCC 19606", "accession": "GCA_020911985.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 80.2594, "matched_fragments": 494, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014636095.1", "gtdb_species": "s__Acinetobacter modestus", "ani": 99.9879, "matched_fragments": 1160, "total_fragments": 1172, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.76", "min_intra_species_ani": "96.94", "mean_intra_species_af": "0.90", 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7, "status": "-" }, { "accession": "GCF_000369805.1", "gtdb_species": "s__Acinetobacter sp000369805", "ani": 84.3435, "matched_fragments": 814, "total_fragments": 1172, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000369405.1", "gtdb_species": "s__Acinetobacter sp000369405", "ani": 84.3259, "matched_fragments": 800, "total_fragments": 1172, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { 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