{ "type": "genome", "identifier": "GCF_000368065.1", "organism": "Acinetobacter seifertii", "title": "Acinetobacter seifertii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Broad Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000368065.1", "bioproject": "PRJNA224116", "biosample": "SAMN01828183", "wgs_master": "APOO00000000.1", "refseq_category": "na", "taxid": "1530123", "species_taxid": "1530123", "organism_name": "Acinetobacter seifertii", "infraspecific_name": "strain=NIPH 973", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/19", "asm_name": "Acin_sp_NIPH_973_V1", "asm_submitter": "Broad Institute", "gbrs_paired_asm": "GCA_000368065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/368/065/GCF_000368065.1_Acin_sp_NIPH_973_V1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4231694", "genome_size_ungapped": "4212819", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "16", "contig_count": "26", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000368065.1-RS_2024_12_23", "annotation_date": "2024-12-23", "total_gene_count": "4133", "protein_coding_gene_count": "3865", "non_coding_gene_count": "87", "pubmed_id": "25563912" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-19", "dateModified": "2013-04-19", "datePublished": "2013-04-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter seifertii" ], "sample_taxid": [ "1530123" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Denmark" ], "sample_host_location_id": [], "data_size": "1.193 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4231694", "Number of Sequences": "16", "Longest Sequences (bp)": "2486286", "N50 (bp)": "2486286", "Gap Ratio (%)": "0.446039", "GCcontent (%)": "38.6", "Number of CDSs": "4026", "Average Protein Length": "302.7", "Coding Ratio (%)": "86.4", "Number of rRNAs": "12", "Number of tRNAs": "71", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter seifertii", "strain": "strain=NIPH 973", "accession": "GCA_000368065.1", "taxid": 1530123, "species_taxid": 1530123, "relation_to_type": "type", "validated": true, "ani": 99.9968, "matched_fragments": 1399, "total_fragments": 1403, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter nosocomialis", "strain": "strain=LMG 10619", "accession": "GCA_000836055.1", "taxid": 106654, "species_taxid": 106654, "relation_to_type": "type", "validated": true, "ani": 92.086, "matched_fragments": 1082, "total_fragments": 1403, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter nosocomialis", "strain": "strain=NIPH 2119", "accession": "GCA_000368085.1", "taxid": 106654, "species_taxid": 106654, "relation_to_type": "type", "validated": true, "ani": 92.0835, "matched_fragments": 1106, "total_fragments": 1403, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=ATCC 19606", "accession": "GCA_020911985.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 90.1864, "matched_fragments": 1074, "total_fragments": 1403, "ani_threshold": 95, "status": "below_threshold" }, { 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"strain=Marseille-P8049", "accession": "GCA_900625095.1", "taxid": 2483802, "species_taxid": 2483802, "relation_to_type": "type", "validated": true, "ani": 79.7812, "matched_fragments": 422, "total_fragments": 1403, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pecorum", "strain": "strain=Sa1BUA6", "accession": "GCA_014837015.1", "taxid": 2762215, "species_taxid": 2762215, "relation_to_type": "type", "validated": true, "ani": 79.2529, "matched_fragments": 280, "total_fragments": 1403, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000368065.1", "gtdb_species": "s__Acinetobacter seifertii", "ani": 99.9968, "matched_fragments": 1399, "total_fragments": 1403, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.88", "min_intra_species_ani": "96.48", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.81", "num_clustered_genomes": 81, "status": "conclusive" }, { "accession": "GCF_000368085.1", "gtdb_species": "s__Acinetobacter nosocomialis", "ani": 92.0835, "matched_fragments": 1106, "total_fragments": 1403, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.94", "min_intra_species_ani": "97.50", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 250, "status": "-" }, { "accession": "GCF_009759685.1", "gtdb_species": "s__Acinetobacter baumannii", "ani": 90.1443, "matched_fragments": 1079, "total_fragments": 1403, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, 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"mean_intra_species_ani": "96.22", "min_intra_species_ani": "95.12", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 40, "status": "-" }, { "accession": "GCF_002928115.1", "gtdb_species": "s__Acinetobacter pittii_H", "ani": 88.6437, "matched_fragments": 1024, "total_fragments": 1403, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.46", "min_intra_species_ani": "96.15", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_013344765.1", "gtdb_species": "s__Acinetobacter lactucae_A", "ani": 88.54, "matched_fragments": 878, "total_fragments": 1403, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, 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