{ "type": "genome", "identifier": "GCF_000368625.1", "organism": "Acinetobacter schindleri CIP 107287", "title": "Acinetobacter schindleri CIP 107287", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Broad Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000368625.1", "bioproject": "PRJNA224116", "biosample": "SAMN01828163", "wgs_master": "APPQ00000000.1", "refseq_category": "na", "taxid": "1217988", "species_taxid": "108981", "organism_name": "Acinetobacter schindleri CIP 107287", "infraspecific_name": "strain=CIP 107287", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/19", "asm_name": "Acin_schi_CIP107287_V1", "asm_submitter": "Broad Institute", "gbrs_paired_asm": "GCA_000368625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/368/625/GCF_000368625.1_Acin_schi_CIP107287_V1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3394558", "genome_size_ungapped": "3358322", "gc_percent": "42.000000", "replicon_count": "0", "scaffold_count": "18", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000368625.1-RS_2024_12_23", "annotation_date": "2024-12-23", "total_gene_count": "3271", "protein_coding_gene_count": "3107", "non_coding_gene_count": "91", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-19", "dateModified": "2013-04-19", "datePublished": "2013-04-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter schindleri CIP 107287" ], "sample_taxid": [ "1217988" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic: Pribram" ], "sample_host_location_id": [], "data_size": "0.955 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3394558", "Number of Sequences": "18", "Longest Sequences (bp)": "1065534", "N50 (bp)": "912463", "Gap Ratio (%)": "1.067473", "GCcontent (%)": "42.2", "Number of CDSs": "3181", "Average Protein Length": "300.8", "Coding Ratio (%)": "84.6", "Number of rRNAs": "11", "Number of tRNAs": "69", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter schindleri", "strain": "strain=CIP 107287", "accession": "GCA_000368625.1", "taxid": 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"validated": true, "ani": 83.5541, "matched_fragments": 711, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pecorum", "strain": "strain=Sa1BUA6", "accession": "GCA_014837015.1", "taxid": 2762215, "species_taxid": 2762215, "relation_to_type": "type", "validated": true, "ani": 82.988, "matched_fragments": 703, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pseudolwoffii", "strain": "strain=ANC 5044", "accession": "GCA_002803605.1", "taxid": 2053287, "species_taxid": 2053287, "relation_to_type": "type", "validated": true, "ani": 82.3682, "matched_fragments": 683, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter wanghuae", "strain": "strain=dk386", "accession": "GCA_009557235.1", "taxid": 2662362, "species_taxid": 2662362, "relation_to_type": "type", "validated": true, "ani": 81.3252, "matched_fragments": 515, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter cumulans", "strain": "strain=WCHAc060092", "accession": "GCA_003024525.3", "taxid": 2136182, "species_taxid": 2136182, "relation_to_type": "type", "validated": true, "ani": 81.1302, "matched_fragments": 489, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=NCTC10308", "accession": "GCA_900444855.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 81.0368, "matched_fragments": 454, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gandensis", "strain": "strain=ANC 4275", "accession": "GCA_001678755.1", "taxid": 1443941, "species_taxid": 1443941, "relation_to_type": "type", "validated": true, "ani": 81.0347, "matched_fragments": 482, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gandensis", "strain": "strain=CCUG 68482", "accession": "GCA_008802205.1", "taxid": 1443941, "species_taxid": 1443941, "relation_to_type": "type", "validated": true, "ani": 80.9566, "matched_fragments": 476, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter chengduensis", "strain": "strain=WCHAc060005", "accession": "GCA_003664645.1", "taxid": 2420890, "species_taxid": 2420890, "relation_to_type": "type", "validated": true, "ani": 80.677, "matched_fragments": 460, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter silvestris", "strain": "strain=ANC 4999", "accession": "GCA_002135235.1", "taxid": 1977882, "species_taxid": 1977882, "relation_to_type": "type", "validated": true, "ani": 79.6663, "matched_fragments": 332, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=PartI-Abaumannii-RM8376", "accession": "GCA_022870045.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 79.2946, "matched_fragments": 320, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=ATCC 19606", "accession": "GCA_020911985.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 79.2927, "matched_fragments": 319, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000368625.1", "gtdb_species": "s__Acinetobacter schindleri", "ani": 99.9952, "matched_fragments": 1111, "total_fragments": 1124, "gtdb_taxonomy": 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