{ "type": "genome", "identifier": "GCF_000368705.1", "organism": "Acinetobacter soli CIP 110264", "title": "Acinetobacter soli CIP 110264", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Broad Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000368705.1", "bioproject": "PRJNA224116", "biosample": "SAMN01087844", "wgs_master": "APPU00000000.1", "refseq_category": "na", "taxid": "1217676", "species_taxid": "487316", "organism_name": "Acinetobacter soli CIP 110264", "infraspecific_name": "strain=CIP 110264", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/19", "asm_name": "Acin_soli_CIP_110264_V1", "asm_submitter": "Broad Institute", "gbrs_paired_asm": "GCA_000368705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/368/705/GCF_000368705.1_Acin_soli_CIP_110264_V1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3359986", "genome_size_ungapped": "3350586", "gc_percent": "43.000000", "replicon_count": "0", "scaffold_count": "9", "contig_count": "17", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000368705.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3168", "protein_coding_gene_count": "3052", "non_coding_gene_count": "88", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-19", "dateModified": "2013-04-19", "datePublished": "2013-04-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter soli CIP 110264" ], "sample_taxid": [ "1217676" ], "sample_host_organism": [ "unknown" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Mt. Baekwoon" ], "sample_host_location_id": [], "data_size": "0.952 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3359986", "Number of Sequences": "9", "Longest Sequences (bp)": "1945459", "N50 (bp)": "1945459", "Gap Ratio (%)": "0.279763", "GCcontent (%)": "43.2", "Number of CDSs": "3086", "Average Protein Length": "316.7", "Coding Ratio (%)": "87.3", "Number of rRNAs": "14", "Number of tRNAs": "66", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter soli", "strain": "strain=KCTC 22184", "accession": "GCA_000760595.1", "taxid": 487316, "species_taxid": 487316, "relation_to_type": "type", "validated": true, "ani": 99.9865, "matched_fragments": 1090, "total_fragments": 1116, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter baylyi", "strain": "strain=CIP 107474", "accession": "GCA_000368685.1", "taxid": 202950, "species_taxid": 202950, "relation_to_type": "type", "validated": true, "ani": 83.2548, "matched_fragments": 711, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baylyi", "strain": "strain=DSM 14961", "accession": "GCA_000621045.1", "taxid": 202950, "species_taxid": 202950, "relation_to_type": "type", "validated": true, "ani": 83.0825, "matched_fragments": 704, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter ursingii", "strain": "strain=CIP 107286", "accession": "GCA_000368825.1", "taxid": 108980, "species_taxid": 108980, "relation_to_type": "type", "validated": true, "ani": 80.0095, "matched_fragments": 452, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { 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"strain": "strain=FDAARGOS_1401", "accession": "GCA_019355975.1", "taxid": 465797, "species_taxid": 465797, "relation_to_type": "type", "validated": true, "ani": 79.7283, "matched_fragments": 489, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter guerrae", "strain": "strain=AC 1271", "accession": "GCA_009372255.1", "taxid": 1843371, "species_taxid": 1843371, "relation_to_type": "type", "validated": true, "ani": 79.7243, "matched_fragments": 459, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter junii", "strain": "strain=NCTC10307", "accession": "GCA_900444875.1", "taxid": 40215, "species_taxid": 40215, "relation_to_type": "type", "validated": true, "ani": 79.4278, "matched_fragments": 300, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter venetianus", "strain": "strain=RAG-1", "accession": 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2126983, "relation_to_type": "type", "validated": true, "ani": 78.8738, "matched_fragments": 249, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gerneri", "strain": "strain=MTCC 9824", "accession": "GCA_000430245.1", "taxid": 202952, "species_taxid": 202952, "relation_to_type": "type", "validated": true, "ani": 78.7799, "matched_fragments": 294, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gerneri", "strain": "strain=KCTC 12415", "accession": "GCA_000747725.1", "taxid": 202952, "species_taxid": 202952, "relation_to_type": "type", "validated": true, "ani": 78.7283, "matched_fragments": 286, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter halotolerans", "strain": "strain=JCM 31009", "accession": "GCA_004208515.1", "taxid": 1752076, "species_taxid": 1752076, "relation_to_type": "type", "validated": 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