{ "type": "genome", "identifier": "GCF_000368765.1", "organism": "Acinetobacter junii CIP 64.5", "title": "Acinetobacter junii CIP 64.5", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Broad Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000368765.1", "bioproject": "PRJNA224116", "biosample": "SAMN01828161", "wgs_master": "APPX00000000.1", "refseq_category": "na", "taxid": "1217664", "species_taxid": "40215", "organism_name": "Acinetobacter junii CIP 64.5", "infraspecific_name": "strain=CIP 64.5", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/19", "asm_name": "Acin_juni_CIP_64_5_V1", "asm_submitter": "Broad Institute", "gbrs_paired_asm": "GCA_000368765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/368/765/GCF_000368765.1_Acin_juni_CIP_64_5_V1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3357744", "genome_size_ungapped": "3330618", "gc_percent": "39.000000", "replicon_count": "0", "scaffold_count": "7", "contig_count": "41", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000368765.1-RS_2024_12_23", "annotation_date": "2024-12-23", "total_gene_count": "3176", "protein_coding_gene_count": "2930", "non_coding_gene_count": "100", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-19", "dateModified": "2013-04-19", "datePublished": "2013-04-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter junii CIP 64.5" ], "sample_taxid": [ "1217664" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Unknown" ], "sample_host_location_id": [], "data_size": "0.943 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3357744", "Number of Sequences": "7", "Longest Sequences (bp)": "1961641", "N50 (bp)": "1961641", "Gap Ratio (%)": "0.807864", "GCcontent (%)": "38.8", "Number of CDSs": "3102", "Average Protein Length": "309.2", "Coding Ratio (%)": "85.7", "Number of rRNAs": "23", "Number of tRNAs": "72", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter junii", "strain": "strain=CIP 64.5", "accession": "GCA_000368765.1", "taxid": 40215, "species_taxid": 40215, "relation_to_type": "type", "validated": true, "ani": 99.9976, "matched_fragments": 1109, "total_fragments": 1115, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter junii", "strain": "strain=NCTC10307", "accession": "GCA_900444875.1", "taxid": 40215, "species_taxid": 40215, "relation_to_type": "type", "validated": true, "ani": 99.9665, "matched_fragments": 1106, "total_fragments": 1115, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter parvus", "strain": "strain=CIP 108168", "accession": "GCA_000368025.1", "taxid": 134533, "species_taxid": 134533, "relation_to_type": "type", "validated": true, "ani": 84.3558, "matched_fragments": 637, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter parvus", "strain": "strain=DSM 16617", "accession": "GCA_000248155.2", "taxid": 134533, "species_taxid": 134533, "relation_to_type": "type", "validated": true, "ani": 84.3472, "matched_fragments": 598, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter haemolyticus", "strain": "strain=FDAARGOS_1392", "accession": "GCA_019355995.1", "taxid": 29430, "species_taxid": 29430, "relation_to_type": "type", "validated": true, "ani": 83.9557, "matched_fragments": 710, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter haemolyticus", "strain": "strain=CIP 64.3", "accession": "GCA_000369065.1", "taxid": 29430, "species_taxid": 29430, "relation_to_type": "type", "validated": true, "ani": 83.9409, "matched_fragments": 699, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter haemolyticus", "strain": "strain=NCTC10305", "accession": "GCA_900444835.1", "taxid": 29430, "species_taxid": 29430, "relation_to_type": "type", "validated": true, "ani": 83.8814, "matched_fragments": 713, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter haemolyticus", "strain": "strain=MTCC 9819", "accession": "GCA_000430205.1", "taxid": 29430, "species_taxid": 29430, "relation_to_type": "type", "validated": true, "ani": 83.7671, "matched_fragments": 684, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter venetianus", "strain": "strain=RAG-1", "accession": "GCA_000271425.1", "taxid": 52133, "species_taxid": 52133, "relation_to_type": "type", "validated": true, "ani": 83.682, "matched_fragments": 752, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter venetianus", "strain": "strain=CIP 110063", "accession": "GCA_000368585.1", "taxid": 52133, "species_taxid": 52133, "relation_to_type": "type", "validated": true, "ani": 83.5721, "matched_fragments": 773, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter proteolyticus", "strain": "strain=NIPH 809", "accession": "GCA_000367945.1", "taxid": 1776741, "species_taxid": 1776741, "relation_to_type": "type", "validated": true, "ani": 82.616, "matched_fragments": 725, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gyllenbergii", "strain": "strain=MTCC 11365", "accession": "GCA_000414075.1", "taxid": 134534, "species_taxid": 134534, "relation_to_type": "type", "validated": true, "ani": 82.5255, "matched_fragments": 719, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gyllenbergii", "strain": "strain=CIP 110306", "accession": "GCA_000413855.1", "taxid": 134534, "species_taxid": 134534, "relation_to_type": "type", "validated": true, "ani": 82.524, "matched_fragments": 722, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=PartI-Abaumannii-RM8376", "accession": "GCA_022870045.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 80.8267, "matched_fragments": 469, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=ATCC 19606", "accession": "GCA_020911985.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 80.7167, "matched_fragments": 467, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pittii", "strain": "strain=CIP70.29", "accession": "GCA_024390955.1", "taxid": 48296, "species_taxid": 48296, "relation_to_type": "type", "validated": true, "ani": 80.3423, "matched_fragments": 509, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000368765.1", "gtdb_species": "s__Acinetobacter junii", "ani": 99.9976, "matched_fragments": 1110, "total_fragments": 1115, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.03", "min_intra_species_ani": "97.21", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.81", "num_clustered_genomes": 75, "status": "conclusive" }, { "accession": "GCF_002165255.2", "gtdb_species": "s__Acinetobacter sp002165255", "ani": 85.7374, "matched_fragments": 691, "total_fragments": 1115, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.92", "min_intra_species_ani": "96.70", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.83", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_000369005.1", "gtdb_species": 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modestus", "ani": 83.9394, "matched_fragments": 719, "total_fragments": 1115, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.76", "min_intra_species_ani": "96.94", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.86", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000369065.1", "gtdb_species": "s__Acinetobacter haemolyticus", "ani": 83.9261, "matched_fragments": 701, "total_fragments": 1115, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.85", "min_intra_species_ani": "97.09", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.81", "num_clustered_genomes": 55, "status": "-" }, { "accession": "GCF_000368585.1", "gtdb_species": "s__Acinetobacter venetianus", "ani": 83.5607, "matched_fragments": 774, "total_fragments": 1115, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.49", "min_intra_species_ani": "96.30", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.81", "num_clustered_genomes": 21, "status": "-" }, { "accession": "GCA_003987695.1", "gtdb_species": "s__Acinetobacter sp003987695", "ani": 83.215, "matched_fragments": 666, "total_fragments": 1115, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.01", "min_intra_species_ani": "98.01", "mean_intra_species_af": "0.75", "min_intra_species_af": "0.75", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000400715.1", "gtdb_species": "s__Acinetobacter sp000400715", "ani": 82.8381, 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