{ "type": "genome", "identifier": "GCF_000368785.1", "organism": "Acinetobacter towneri DSM 14962 = CIP 107472", "title": "Acinetobacter towneri DSM 14962 = CIP 107472", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Broad Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000368785.1", "bioproject": "PRJNA224116", "biosample": "SAMN01087853", "wgs_master": "APPY00000000.1", "refseq_category": "na", "taxid": "1120929", "species_taxid": "202956", "organism_name": "Acinetobacter towneri DSM 14962 = CIP 107472", "infraspecific_name": "strain=CIP 107472", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/19", "asm_name": "Acin_town_CIP_107472_V1", "asm_submitter": "Broad Institute", "gbrs_paired_asm": "GCA_000368785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/368/785/GCF_000368785.1_Acin_town_CIP_107472_V1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2952354", "genome_size_ungapped": "2898609", "gc_percent": "41.000000", "replicon_count": "0", "scaffold_count": "42", "contig_count": "78", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000368785.1-RS_2025_01_07", "annotation_date": "2025-01-07", "total_gene_count": "2858", "protein_coding_gene_count": "2675", "non_coding_gene_count": "83", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-19", "dateModified": "2013-04-19", "datePublished": "2013-04-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter towneri DSM 14962 = CIP 107472" ], "sample_taxid": [ "1120929" ], "sample_host_organism": [ "unknown" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Bendigo, Victoria" ], "sample_host_location_id": [], "data_size": "0.821 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2952354", "Number of Sequences": "42", "Longest Sequences (bp)": "786701", "N50 (bp)": "587353", "Gap Ratio (%)": "1.820412", "GCcontent (%)": "41.2", "Number of CDSs": "2726", "Average Protein Length": "298.4", "Coding Ratio (%)": "82.7", "Number of rRNAs": "10", "Number of tRNAs": "61", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter towneri", "strain": "strain=CIP 107472", "accession": "GCA_000368785.1", "taxid": 202956, "species_taxid": 202956, "relation_to_type": "type", "validated": true, "ani": 99.9877, "matched_fragments": 946, "total_fragments": 962, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Acinetobacter towneri", "strain": "strain=DSM 14962", "accession": "GCA_000688495.1", "taxid": 202956, "species_taxid": 202956, "relation_to_type": "type", "validated": true, "ani": 99.9488, "matched_fragments": 891, "total_fragments": 962, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Acinetobacter seohaensis", "strain": "strain=DSM 16313", "accession": "GCA_018403785.1", "taxid": 281376, "species_taxid": 281376, "relation_to_type": "type", "validated": true, "ani": 97.7159, "matched_fragments": 773, "total_fragments": 962, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Acinetobacter indicus", "strain": "strain=DSM 25388", "accession": "GCA_000830155.1", "taxid": 756892, "species_taxid": 756892, "relation_to_type": "type", "validated": true, "ani": 81.8164, "matched_fragments": 556, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=FDAARGOS_910", "accession": "GCA_016027055.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 81.2804, "matched_fragments": 531, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=NCTC10308", "accession": "GCA_900444855.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 81.2016, "matched_fragments": 524, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=DSM 6963", "accession": "GCA_000949655.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 80.8562, "matched_fragments": 489, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter kanungonis", "strain": "strain=PS-1", "accession": "GCA_009939195.1", "taxid": 2699469, "species_taxid": 2699469, "relation_to_type": "type", "validated": true, "ani": 80.771, "matched_fragments": 506, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter chengduensis", "strain": "strain=WCHAc060005", "accession": "GCA_003664645.1", "taxid": 2420890, "species_taxid": 2420890, "relation_to_type": "type", "validated": true, "ani": 80.5528, "matched_fragments": 480, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter terrae", "strain": "strain=ANC 4282", "accession": "GCA_013004375.1", "taxid": 2731247, "species_taxid": 2731247, "relation_to_type": "type", "validated": true, "ani": 80.5239, "matched_fragments": 531, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pecorum", "strain": "strain=Sa1BUA6", "accession": "GCA_014837015.1", "taxid": 2762215, "species_taxid": 2762215, "relation_to_type": "type", "validated": true, "ani": 80.2672, "matched_fragments": 462, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter equi", "strain": "strain=114", "accession": "GCA_001307195.1", "taxid": 1324350, "species_taxid": 1324350, "relation_to_type": "type", "validated": true, "ani": 80.2577, "matched_fragments": 400, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter haemolyticus", "strain": "strain=NCTC10305", "accession": "GCA_900444835.1", "taxid": 29430, "species_taxid": 29430, "relation_to_type": "type", "validated": true, "ani": 79.8579, "matched_fragments": 364, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter sichuanensis", "strain": "strain=WCHAc060041", "accession": "GCA_003024515.2", "taxid": 2136183, "species_taxid": 2136183, "relation_to_type": "type", "validated": true, "ani": 79.8077, "matched_fragments": 451, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gerneri", "strain": "strain=KCTC 12415", "accession": "GCA_000747725.1", "taxid": 202952, "species_taxid": 202952, "relation_to_type": "type", "validated": true, "ani": 79.7907, "matched_fragments": 401, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter colistiniresistens", "strain": "strain=NIPH 2036", "accession": "GCA_000413935.1", "taxid": 280145, "species_taxid": 280145, "relation_to_type": "type", "validated": true, "ani": 79.7737, "matched_fragments": 375, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter silvestris", "strain": "strain=ANC 4999", "accession": "GCA_002135235.1", "taxid": 1977882, "species_taxid": 1977882, "relation_to_type": "type", "validated": true, "ani": 79.425, "matched_fragments": 417, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter ihumii", "strain": "strain=Marseille-P8049", "accession": "GCA_900625095.1", "taxid": 2483802, "species_taxid": 2483802, "relation_to_type": "type", "validated": true, "ani": 79.326, "matched_fragments": 379, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000368785.1", "gtdb_species": "s__Acinetobacter towneri", "ani": 99.9929, "matched_fragments": 946, "total_fragments": 962, "gtdb_taxonomy": 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