{ "type": "genome", "identifier": "GCF_000369005.1", "organism": "Acinetobacter beijerinckii CIP 110307", "title": "Acinetobacter beijerinckii CIP 110307", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Broad Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000369005.1", "bioproject": "PRJNA224116", "biosample": "SAMN01087842", "wgs_master": "APQL00000000.1", "refseq_category": "reference genome", "taxid": "1217648", "species_taxid": "262668", "organism_name": "Acinetobacter beijerinckii CIP 110307", "infraspecific_name": "strain=CIP 110307", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/19", "asm_name": "Acin_beij_CIP_110307_V1", "asm_submitter": "Broad Institute", "gbrs_paired_asm": "GCA_000369005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/369/005/GCF_000369005.1_Acin_beij_CIP_110307_V1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3563334", "genome_size_ungapped": "3556901", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "5", "contig_count": "13", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000369005.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3390", "protein_coding_gene_count": "3258", "non_coding_gene_count": "88", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-19", "dateModified": "2013-04-19", "datePublished": "2013-04-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter beijerinckii CIP 110307" ], "sample_taxid": [ "1217648" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden: Malmo" ], "sample_host_location_id": [], "data_size": "1.004 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3563334", "Number of Sequences": "5", "Longest Sequences (bp)": "1614661", "N50 (bp)": "834085", "Gap Ratio (%)": "0.180533", "GCcontent (%)": "38.3", "Number of CDSs": "3316", "Average Protein Length": "311.6", "Coding Ratio (%)": "87.0", "Number of rRNAs": "16", "Number of tRNAs": "69", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter junii", "strain": "strain=NCTC10307", "accession": "GCA_900444875.1", 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83.5013, "matched_fragments": 810, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter venetianus", "strain": "strain=CIP 110063", "accession": "GCA_000368585.1", "taxid": 52133, "species_taxid": 52133, "relation_to_type": "type", "validated": true, "ani": 83.4874, "matched_fragments": 826, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gyllenbergii", "strain": "strain=CIP 110306", "accession": "GCA_000413855.1", "taxid": 134534, "species_taxid": 134534, "relation_to_type": "type", "validated": true, "ani": 83.4647, "matched_fragments": 834, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter proteolyticus", "strain": "strain=NIPH 809", "accession": "GCA_000367945.1", "taxid": 1776741, "species_taxid": 1776741, "relation_to_type": "type", "validated": true, "ani": 83.4582, "matched_fragments": 836, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter colistiniresistens", "strain": "strain=NIPH 2036", "accession": "GCA_000413935.1", "taxid": 280145, "species_taxid": 280145, "relation_to_type": "type", "validated": true, "ani": 83.4276, "matched_fragments": 802, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gyllenbergii", "strain": "strain=MTCC 11365", "accession": "GCA_000414075.1", "taxid": 134534, "species_taxid": 134534, "relation_to_type": "type", "validated": true, "ani": 83.4073, "matched_fragments": 836, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter vivianii", "strain": "strain=CCM 8642", "accession": "GCA_014635885.1", "taxid": 1776742, "species_taxid": 1776742, "relation_to_type": "type", "validated": true, "ani": 83.2838, "matched_fragments": 762, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter courvalinii", "strain": "strain=CCM 8635", "accession": "GCA_014635545.1", "taxid": 280147, "species_taxid": 280147, "relation_to_type": "type", "validated": true, "ani": 82.7244, "matched_fragments": 746, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter courvalinii", "strain": "strain=CCUG 67960", "accession": "GCA_008802255.1", "taxid": 280147, "species_taxid": 280147, "relation_to_type": "type", "validated": true, "ani": 82.6634, "matched_fragments": 755, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter halotolerans", "strain": "strain=JCM 31009", "accession": "GCA_004208515.1", "taxid": 1752076, "species_taxid": 1752076, "relation_to_type": "type", "validated": true, "ani": 82.6497, "matched_fragments": 761, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=PartI-Abaumannii-RM8376", "accession": "GCA_022870045.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 80.135, "matched_fragments": 500, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pittii", "strain": "strain=CIP70.29", "accession": "GCA_024390955.1", "taxid": 48296, "species_taxid": 48296, "relation_to_type": "type", "validated": true, "ani": 80.1113, "matched_fragments": 509, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=ATCC 19606", "accession": "GCA_020911985.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 80.1068, "matched_fragments": 495, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 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