{ "type": "genome", "identifier": "GCF_000372385.1", "organism": "Corynebacterium ciconiae DSM 44920", "title": "Corynebacterium ciconiae DSM 44920", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000372385.1", "bioproject": "PRJNA224116", "biosample": "SAMN02256507", "wgs_master": "AQUW00000000.1", "refseq_category": "na", "taxid": "1121356", "species_taxid": "227319", "organism_name": "Corynebacterium ciconiae DSM 44920", "infraspecific_name": "strain=DSM 44920", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/19", "asm_name": "ASM37238v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000372385.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/372/385/GCF_000372385.1_ASM37238v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2545566", "genome_size_ungapped": "2545566", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "22", "contig_count": "22", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000372385.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "2238", "protein_coding_gene_count": "2161", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-19", "dateModified": "2013-04-19", "datePublished": "2013-04-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium ciconiae DSM 44920" ], "sample_taxid": [ "1121356" ], "sample_host_organism": [ "Ciconia nigra" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], "sample_host_location_id": [], "data_size": "0.718 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2545566", "Number of Sequences": "22", "Longest Sequences (bp)": "858068", "N50 (bp)": "314418", "Gap Ratio (%)": "0.000157", "GCcontent (%)": "62.1", "Number of CDSs": "2209", "Average Protein Length": "336.0", "Coding Ratio (%)": "87.5", "Number of rRNAs": "5", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium ciconiae", "strain": "strain=DSM 44920", "accession": "GCA_000372385.1", "taxid": 227319, "species_taxid": 227319, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"organism_name": "Corynebacterium testudinoris", "strain": "strain=DSM 44614", "accession": "GCA_001021045.1", "taxid": 136857, "species_taxid": 136857, "relation_to_type": "type", "validated": true, "ani": 77.7595, "matched_fragments": 156, "total_fragments": 839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium ureicelerivorans", "strain": "strain=IMMIB RIV-2301", "accession": "GCA_000747315.1", "taxid": 401472, "species_taxid": 401472, "relation_to_type": "type", "validated": true, "ani": 77.7528, "matched_fragments": 127, "total_fragments": 839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium haemomassiliense", "strain": "strain=Marseille-Q3615", "accession": "GCA_013978595.1", "taxid": 2754726, "species_taxid": 2754726, "relation_to_type": "type", "validated": true, "ani": 77.6977, "matched_fragments": 148, "total_fragments": 839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"strain=SN14", "accession": "GCA_900078305.2", "taxid": 1720192, "species_taxid": 1720192, "relation_to_type": "type", "validated": true, "ani": 77.5821, "matched_fragments": 157, "total_fragments": 839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium mucifaciens", "strain": "strain=ATCC 700355", "accession": "GCA_012396315.1", "taxid": 57171, "species_taxid": 57171, "relation_to_type": "type", "validated": true, "ani": 77.5095, "matched_fragments": 141, "total_fragments": 839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium godavarianum", "strain": "strain=LMG 29598", "accession": "GCA_007559235.1", "taxid": 2054421, "species_taxid": 2054421, "relation_to_type": "type", "validated": true, "ani": 77.4612, "matched_fragments": 143, "total_fragments": 839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium glutamicum", "strain": "strain=ATCC 13032", "accession": 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"coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Corynebacterium", "ciconiae", "DSM", "44920" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }