{ "tc_result": [ { "organism_name": "Streptococcus ferus", "strain": "strain=DSM 20646", "accession": "GCA_000372425.1", "taxid": 1345, "species_taxid": 1345, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 609, "total_fragments": 610, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus ferus", "strain": "strain=NCTC12278", "accession": "GCA_900475025.1", "taxid": 1345, "species_taxid": 1345, "relation_to_type": "type", "validated": true, "ani": 99.9972, "matched_fragments": 610, "total_fragments": 610, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus oriscaviae", "strain": "strain=HKU75", "accession": "GCA_018137985.1", "taxid": 2781599, "species_taxid": 2781599, "relation_to_type": "type", "validated": true, "ani": 80.2129, "matched_fragments": 107, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ratti", "strain": "strain=DSM 20564", "accession": "GCA_000347915.1", "taxid": 1341, "species_taxid": 1341, "relation_to_type": "suspected-type", "validated": true, "ani": 79.8316, "matched_fragments": 158, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ratti", "strain": "strain=FA-1", "accession": "GCA_000286075.1", "taxid": 1341, "species_taxid": 1341, "relation_to_type": "suspected-type", "validated": true, "ani": 79.769, "matched_fragments": 176, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus plurextorum", "strain": "strain=DSM 22810", "accession": "GCA_000423745.1", "taxid": 456876, "species_taxid": 456876, "relation_to_type": "type", "validated": true, "ani": 79.7503, "matched_fragments": 77, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus thermophilus", "strain": "strain=ATCC 19258", "accession": "GCA_010120595.1", "taxid": 1308, "species_taxid": 1308, "relation_to_type": "type", "validated": true, "ani": 78.8849, "matched_fragments": 74, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasuis", "strain": "strain=SUT-286", "accession": "GCA_021654455.1", "taxid": 1501662, "species_taxid": 1501662, "relation_to_type": "suspected-type", "validated": true, "ani": 78.7656, "matched_fragments": 73, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus thermophilus", "strain": "strain=DSM 20617", "accession": "GCA_019972875.1", "taxid": 1308, "species_taxid": 1308, "relation_to_type": "type", "validated": true, "ani": 78.6905, "matched_fragments": 74, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus catagoni", "strain": "strain=99-1/2017", "accession": "GCA_011421425.1", "taxid": 2654874, "species_taxid": 2654874, "relation_to_type": "type", "validated": true, "ani": 78.4956, "matched_fragments": 64, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus equi subsp. ruminatorum", "strain": "strain=CECT 5772", "accession": "GCA_000706805.1", "taxid": 254358, "species_taxid": 1336, "relation_to_type": "type", "validated": true, "ani": 78.105, "matched_fragments": 62, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus devriesei", "strain": "strain=DSM 19639", "accession": "GCA_000423725.1", "taxid": 231233, "species_taxid": 231233, "relation_to_type": "type", "validated": true, "ani": 78.0833, "matched_fragments": 155, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus sanguinis", "strain": "strain=NCTC7863", "accession": "GCA_900475505.1", "taxid": 1305, "species_taxid": 1305, "relation_to_type": "suspected-type", "validated": true, "ani": 78.0106, "matched_fragments": 86, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus peroris", "strain": "strain=ATCC 700780", "accession": "GCA_000187585.1", "taxid": 68891, "species_taxid": 68891, "relation_to_type": "type", "validated": true, "ani": 77.9041, "matched_fragments": 61, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus toyakuensis", "strain": "strain=TP1632", "accession": "GCA_024346585.1", "taxid": 2819619, "species_taxid": 2819619, "relation_to_type": "type", "validated": true, "ani": 77.9035, "matched_fragments": 65, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus troglodytae", "strain": "strain=TKU 31", "accession": "GCA_002355215.1", "taxid": 1111760, "species_taxid": 1111760, "relation_to_type": "type", "validated": true, "ani": 77.851, "matched_fragments": 143, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ruminantium", "strain": "strain=GUT187T", "accession": "GCA_003609975.1", "taxid": 1917441, "species_taxid": 1917441, "relation_to_type": "type", "validated": true, "ani": 77.7785, "matched_fragments": 71, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus sanguinis", "strain": "strain=NCTC 7863", "accession": "GCA_001593525.1", "taxid": 1305, "species_taxid": 1305, "relation_to_type": "suspected-type", "validated": true, "ani": 77.7754, "matched_fragments": 79, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 77.658, "matched_fragments": 75, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pantholopis", "strain": "strain=TA 26", "accession": "GCA_001642085.1", "taxid": 1811193, "species_taxid": 1811193, "relation_to_type": "type", "validated": true, "ani": 77.4685, "matched_fragments": 71, "total_fragments": 610, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000372425.1", "gtdb_species": "s__Streptococcus ferus", "ani": 100.0, "matched_fragments": 609, "total_fragments": 610, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_018137985.1", "gtdb_species": "s__Streptococcus sp018137985", "ani": 80.1606, "matched_fragments": 109, "total_fragments": 610, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000286075.1", "gtdb_species": "s__Streptococcus ratti", "ani": 79.7988, "matched_fragments": 175, "total_fragments": 610, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.59", "min_intra_species_ani": "98.38", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.87", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_002964045.1", "gtdb_species": "s__Streptococcus suis_U", "ani": 79.3979, "matched_fragments": 73, "total_fragments": 610, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.50", "min_intra_species_ani": "95.50", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.81", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002964575.1", "gtdb_species": "s__Streptococcus suis_R", "ani": 79.3029, "matched_fragments": 79, "total_fragments": 610, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002960625.1", "gtdb_species": "s__Streptococcus suis_T", "ani": 79.2755, "matched_fragments": 88, "total_fragments": 610, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000186445.1", "gtdb_species": "s__Streptococcus agalactiae", "ani": 78.7614, "matched_fragments": 72, "total_fragments": 610, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.63", "min_intra_species_ani": "98.18", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.63", "num_clustered_genomes": 1516, "status": "-" }, { "accession": "GCF_001074155.1", "gtdb_species": "s__Streptococcus pseudopneumoniae_A", "ani": 78.1665, "matched_fragments": 62, "total_fragments": 610, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000423725.1", "gtdb_species": "s__Streptococcus devriesei", "ani": 78.0833, "matched_fragments": 155, "total_fragments": 610, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001937065.1", "gtdb_species": "s__Streptococcus sp001937065", "ani": 78.0598, "matched_fragments": 161, "total_fragments": 610, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_901875555.1", "gtdb_species": "s__Streptococcus parasanguinis_H", "ani": 78.0515, "matched_fragments": 74, "total_fragments": 610, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000963275.1", "gtdb_species": "s__Streptococcus parasanguinis_B", "ani": 78.0362, "matched_fragments": 69, "total_fragments": 610, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.2991, "mean_intra_species_ani": "95.64", "min_intra_species_ani": "95.37", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.85", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_002096855.1", "gtdb_species": "s__Streptococcus mitis_Y", "ani": 78.0041, "matched_fragments": 64, "total_fragments": 610, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.03", "min_intra_species_ani": "96.03", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001078705.1", "gtdb_species": "s__Streptococcus sanguinis_D", "ani": 77.995, "matched_fragments": 77, "total_fragments": 610, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001650315.1", "gtdb_species": "s__Streptococcus sp001650315", "ani": 77.9404, "matched_fragments": 69, "total_fragments": 610, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.60", "min_intra_species_ani": "97.60", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000194945.1", "gtdb_species": "s__Streptococcus sanguinis", "ani": 77.9166, "matched_fragments": 83, "total_fragments": 610, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.02", "min_intra_species_ani": "95.01", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 47, "status": "-" }, { "accession": "GCF_000187585.1", "gtdb_species": "s__Streptococcus peroris", "ani": 77.9041, "matched_fragments": 61, "total_fragments": 610, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.68", "min_intra_species_ani": "96.68", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002355215.1", "gtdb_species": "s__Streptococcus troglodytae", "ani": 77.851, "matched_fragments": 143, "total_fragments": 610, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015594605.1", "gtdb_species": "s__Streptococcus sp015594605", "ani": 77.7719, "matched_fragments": 89, "total_fragments": 610, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001598035.1", "gtdb_species": "s__Streptococcus halotolerans", "ani": 77.7048, "matched_fragments": 83, "total_fragments": 610, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011038795.1", "gtdb_species": "s__Streptococcus sp011038795", "ani": 77.6689, "matched_fragments": 84, "total_fragments": 610, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.03", "min_intra_species_ani": "99.03", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001579665.1", "gtdb_species": "s__Streptococcus mitis_S", "ani": 77.6567, "matched_fragments": 70, "total_fragments": 610, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.64", "min_intra_species_ani": "95.33", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.85", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001811505.1", "gtdb_species": "s__Streptococcus sp001811505", "ani": 77.6172, "matched_fragments": 71, "total_fragments": 610, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009496285.1", "gtdb_species": "s__Streptococcus mitis_BP", "ani": 77.6036, "matched_fragments": 71, "total_fragments": 610, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013343115.1", "gtdb_species": "s__Streptococcus sanguinis_H", "ani": 77.4886, "matched_fragments": 91, "total_fragments": 610, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.75", "min_intra_species_ani": "95.06", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 13, "status": "-" }, { "accession": "GCF_001642085.1", "gtdb_species": "s__Streptococcus pantholopis", "ani": 77.4685, "matched_fragments": 71, "total_fragments": 610, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }