{ "type": "genome", "identifier": "GCF_000372445.1", "organism": "Corynebacterium ulceribovis DSM 45146", "title": "Corynebacterium ulceribovis DSM 45146", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000372445.1", "bioproject": "PRJNA224116", "biosample": "SAMN02256494", "wgs_master": "AQUY00000000.1", "refseq_category": "reference genome", "taxid": "1121370", "species_taxid": "487732", "organism_name": "Corynebacterium ulceribovis DSM 45146", "infraspecific_name": "strain=DSM 45146", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/19", "asm_name": "ASM37244v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000372445.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/372/445/GCF_000372445.1_ASM37244v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2300451", "genome_size_ungapped": "2300451", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "8", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000372445.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "2130", "protein_coding_gene_count": "2060", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-19", "dateModified": "2013-04-19", "datePublished": "2013-04-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium ulceribovis DSM 45146" ], "sample_taxid": [ "1121370" ], "sample_host_organism": [ "Bos taurus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "0.650 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2300451", "Number of Sequences": "8", "Longest Sequences (bp)": "1158500", "N50 (bp)": "1158500", "Gap Ratio (%)": "0.000913", "GCcontent (%)": "59.2", "Number of CDSs": "2120", "Average Protein Length": "329.4", "Coding Ratio (%)": "91.1", "Number of rRNAs": "4", "Number of tRNAs": "45", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium ulceribovis", "strain": "strain=DSM 45146", "accession": "GCA_000372445.1", "taxid": 487732, "species_taxid": 487732, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 763, "total_fragments": 763, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium glutamicum", "strain": "strain=ATCC 13032", "accession": "GCA_002847405.1", "taxid": 1718, "species_taxid": 1718, "relation_to_type": "type", "validated": true, "ani": 77.5721, "matched_fragments": 92, "total_fragments": 763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium tuberculostearicum", "strain": "strain=DSM 44922", "accession": "GCA_013408445.1", "taxid": 38304, "species_taxid": 38304, "relation_to_type": "type", "validated": true, "ani": 77.5622, "matched_fragments": 81, "total_fragments": 763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium tuberculostearicum", "strain": "strain=FDAARGOS_1117", "accession": "GCA_016728365.1", "taxid": 38304, "species_taxid": 38304, "relation_to_type": "type", "validated": true, "ani": 77.5621, "matched_fragments": 81, "total_fragments": 763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium glutamicum", "strain": "strain=ATCC 13032", "accession": "GCA_011761195.1", "taxid": 1718, "species_taxid": 1718, "relation_to_type": "type", "validated": true, "ani": 77.5551, "matched_fragments": 92, "total_fragments": 763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium glutamicum", "strain": "strain=ATCC 13032", "accession": "GCA_000011325.1", "taxid": 1718, "species_taxid": 1718, "relation_to_type": "type", "validated": true, "ani": 77.5204, "matched_fragments": 90, "total_fragments": 763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium glutamicum", "strain": "strain=ATCC 13032 substr. 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