{ "type": "genome", "identifier": "GCF_000372465.1", "organism": "Kribbella catacumbae DSM 19601", "title": "Kribbella catacumbae DSM 19601", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000372465.1", "bioproject": "PRJNA224116", "biosample": "SAMN02256503", "wgs_master": "AQUZ00000000.1", "refseq_category": "reference genome", "taxid": "1122138", "species_taxid": "460086", "organism_name": "Kribbella catacumbae DSM 19601", "infraspecific_name": "strain=DSM 19601", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/19", "asm_name": "ASM37246v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000372465.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/372/465/GCF_000372465.1_ASM37246v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9627810", "genome_size_ungapped": "9627810", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "152", "contig_count": "152", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000372465.1-RS_2024_03_21", "annotation_date": "2024-03-21", "total_gene_count": "8945", "protein_coding_gene_count": "8779", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-19", "dateModified": "2013-04-19", "datePublished": "2013-04-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Kribbella catacumbae DSM 19601" ], "sample_taxid": [ "1122138" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy" ], "sample_host_location_id": [], "data_size": "2.644 MB", "sample_ph_range": { "min": 510.0, "max": 510.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 5.21, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9627810", "Number of Sequences": "152", "Longest Sequences (bp)": "493951", "N50 (bp)": "138204", "Gap Ratio (%)": "0.001329", "GCcontent (%)": "67.5", "Number of CDSs": "8917", "Average Protein Length": "320.5", "Coding Ratio (%)": "89.1", "Number of rRNAs": "3", "Number of tRNAs": "68", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kribbella catacumbae", "strain": "strain=DSM 19601", "accession": "GCA_000372465.1", "taxid": 460086, "species_taxid": 460086, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3126, "total_fragments": 3130, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kribbella monticola", "strain": "strain=NEAU-SW521", "accession": "GCA_003261635.1", "taxid": 2185285, "species_taxid": 2185285, "relation_to_type": "type", "validated": true, "ani": 83.6691, "matched_fragments": 1726, "total_fragments": 3130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella flavida", "strain": "strain=DSM 17836", "accession": "GCA_000024345.1", "taxid": 182640, "species_taxid": 182640, "relation_to_type": "type", "validated": true, "ani": 83.5318, "matched_fragments": 1664, "total_fragments": 3130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella italica", "strain": "strain=DSM 28967", "accession": "GCA_014205135.1", "taxid": 1540520, "species_taxid": 1540520, "relation_to_type": "type", "validated": true, "ani": 83.4591, "matched_fragments": 1759, "total_fragments": 3130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella turkmenica", "strain": "strain=16K104", "accession": "GCA_004348725.1", "taxid": 2530375, "species_taxid": 2530375, "relation_to_type": "type", "validated": true, "ani": 82.9994, "matched_fragments": 1470, "total_fragments": 3130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella amoyensis", "strain": "strain=DSM 24683", "accession": "GCA_007828865.1", "taxid": 996641, "species_taxid": 996641, "relation_to_type": "type", "validated": true, "ani": 82.9831, "matched_fragments": 1621, "total_fragments": 3130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella capetownensis", "strain": "strain=YM53", "accession": "GCA_004331485.1", "taxid": 1572659, "species_taxid": 1572659, "relation_to_type": "type", "validated": true, "ani": 82.5073, "matched_fragments": 1607, "total_fragments": 3130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella aluminosa", "strain": "strain=DSM 18824", "accession": "GCA_017876295.1", "taxid": 416017, "species_taxid": 416017, "relation_to_type": "type", "validated": true, "ani": 82.3239, "matched_fragments": 1585, "total_fragments": 3130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella shirazensis", "strain": "strain=DSM 45490", "accession": "GCA_011761605.1", "taxid": 1105143, "species_taxid": 1105143, "relation_to_type": "type", "validated": true, "ani": 82.2157, "matched_fragments": 1603, "total_fragments": 3130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella sindirgiensis", "strain": "strain=DSM 27082", "accession": "GCA_004331435.1", "taxid": 1124744, "species_taxid": 1124744, "relation_to_type": "type", "validated": true, "ani": 82.1984, "matched_fragments": 1618, "total_fragments": 3130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella jiaozuonensis", "strain": "strain=NEAU-THZ27", "accession": "GCA_005233875.1", "taxid": 2575441, "species_taxid": 2575441, "relation_to_type": "type", "validated": true, "ani": 82.1457, "matched_fragments": 1538, "total_fragments": 3130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella speibonae", "strain": "strain=YM55", "accession": "GCA_004331375.1", "taxid": 1572660, "species_taxid": 1572660, "relation_to_type": "type", "validated": true, "ani": 82.1429, "matched_fragments": 1633, "total_fragments": 3130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella jejuensis", "strain": "strain=DSM 17305", "accession": "GCA_006715085.1", "taxid": 236068, "species_taxid": 236068, "relation_to_type": "type", "validated": true, "ani": 82.0722, "matched_fragments": 1454, "total_fragments": 3130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella antibiotica", "strain": "strain=JCM 13523", "accession": "GCA_004349055.1", "taxid": 190195, "species_taxid": 190195, "relation_to_type": "type", "validated": true, "ani": 81.8126, "matched_fragments": 1483, "total_fragments": 3130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella solani", "strain": "strain=DSM 17294", "accession": "GCA_014205295.1", "taxid": 236067, "species_taxid": 236067, "relation_to_type": "type", "validated": true, "ani": 81.7787, "matched_fragments": 1411, "total_fragments": 3130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panacis", "strain": "strain=G188", "accession": "GCA_019039255.1", "taxid": 2849501, "species_taxid": 2849501, "relation_to_type": "type", "validated": true, "ani": 77.7225, "matched_fragments": 532, "total_fragments": 3130, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 5.21, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000372465.1", "gtdb_species": "s__Kribbella catacumbae", "ani": 100.0, "matched_fragments": 3126, "total_fragments": 3130, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_010548305.1", "gtdb_species": "s__Kribbella sp010548305", "ani": 87.3336, "matched_fragments": 1952, "total_fragments": 3130, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004345365.1", "gtdb_species": "s__Kribbella sp004345365", "ani": 84.8656, "matched_fragments": 1808, "total_fragments": 3130, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.33", "min_intra_species_ani": "95.31", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_004365175.1", "gtdb_species": "s__Kribbella sp004365175", "ani": 83.9113, "matched_fragments": 1754, "total_fragments": 3130, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003261635.1", "gtdb_species": "s__Kribbella monticola", "ani": 83.6745, "matched_fragments": 1724, "total_fragments": 3130, 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