{ "type": "genome", "identifier": "GCF_000372805.1", "organism": "Marinobacter gelidimuriae", "title": "Marinobacter gelidimuriae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000372805.1", "bioproject": "PRJNA224116", "biosample": "SAMN02256466", "wgs_master": "ARCR00000000.1", "refseq_category": "reference genome", "taxid": "2739064", "species_taxid": "2739064", "organism_name": "Marinobacter gelidimuriae", "infraspecific_name": "strain=BF04_CF-4", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/23", "asm_name": "ASM37280v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000372805.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/372/805/GCF_000372805.1_ASM37280v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3633797", "genome_size_ungapped": "3629441", "gc_percent": "54.500000", "replicon_count": "0", "scaffold_count": "136", "contig_count": "139", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000372805.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3752", "protein_coding_gene_count": "3441", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-23", "dateModified": "2013-04-23", "datePublished": "2013-04-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter gelidimuriae" ], "sample_taxid": [ "2739064" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Missing" ], "sample_host_location_id": [], "data_size": "1.041 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3633797", "Number of Sequences": "136", "Longest Sequences (bp)": "225700", "N50 (bp)": "70489", "Gap Ratio (%)": "0.124856", "GCcontent (%)": "54.7", "Number of CDSs": "3604", "Average Protein Length": "290.8", "Coding Ratio (%)": "86.5", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter gelidimuriae", "strain": "strain=BF04_CF-4", "accession": "GCA_000372805.1", "taxid": 2739064, "species_taxid": 2739064, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1136, "total_fragments": 1147, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacter psychrophilus", "strain": "strain=20041", "accession": "GCA_001043175.1", "taxid": 330734, "species_taxid": 330734, "relation_to_type": "type", "validated": true, "ani": 91.903, "matched_fragments": 824, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter antarcticus", "strain": "strain=CGMCC 1.10835", "accession": "GCA_900142385.1", "taxid": 564117, "species_taxid": 564117, "relation_to_type": "type", "validated": true, "ani": 79.7899, "matched_fragments": 328, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter maritimus", "strain": "strain=CK47", "accession": "GCA_007671675.1", "taxid": 277961, "species_taxid": 277961, "relation_to_type": "type", "validated": true, "ani": 78.6695, "matched_fragments": 334, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter vinifirmus", "strain": "strain=FB1", "accession": "GCA_002258215.1", "taxid": 355591, "species_taxid": 355591, "relation_to_type": "type", "validated": true, "ani": 78.256, "matched_fragments": 325, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter lipolyticus", "strain": "strain=SM19", "accession": "GCA_000397065.2", "taxid": 209639, "species_taxid": 209639, "relation_to_type": "type", "validated": true, "ani": 78.1516, "matched_fragments": 249, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter halophilus", "strain": "strain=JCM 30472", "accession": "GCA_003007685.1", "taxid": 1323740, "species_taxid": 1323740, "relation_to_type": "type", "validated": true, "ani": 78.1332, "matched_fragments": 310, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter halophilus", "strain": "strain=CGMCC 1.12481", "accession": "GCA_014637865.1", "taxid": 1323740, "species_taxid": 1323740, "relation_to_type": "type", "validated": true, "ani": 78.084, "matched_fragments": 303, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter guineae", "strain": "strain=M3B", "accession": "GCA_002744735.1", "taxid": 432303, "species_taxid": 432303, "relation_to_type": "type", "validated": true, "ani": 78.0786, "matched_fragments": 305, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter goseongensis", "strain": "strain=KCTC 12515", "accession": "GCA_023156235.1", "taxid": 453838, "species_taxid": 453838, "relation_to_type": "type", "validated": true, "ani": 78.0758, "matched_fragments": 265, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter nauticus", "strain": "strain=DSM 50418", "accession": "GCA_003634635.1", "taxid": 2743, "species_taxid": 2743, "relation_to_type": "type", "validated": true, "ani": 78.0632, "matched_fragments": 275, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter pelagius", "strain": "strain=CGMCC 1.6775", "accession": "GCA_900114925.1", "taxid": 379482, "species_taxid": 379482, "relation_to_type": "type", "validated": true, "ani": 78.0434, "matched_fragments": 280, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter similis", "strain": "strain=A3d10", "accession": "GCA_000830985.1", "taxid": 1420916, "species_taxid": 1420916, "relation_to_type": "type", "validated": true, "ani": 77.9638, "matched_fragments": 299, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter salinus", "strain": "strain=Hb8", "accession": "GCA_001854125.1", "taxid": 1874317, "species_taxid": 1874317, "relation_to_type": "type", "validated": true, "ani": 77.9627, "matched_fragments": 240, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter confluentis", "strain": "strain=KCTC 42705", "accession": "GCA_008795935.1", "taxid": 1697557, "species_taxid": 1697557, "relation_to_type": "type", "validated": true, "ani": 77.8628, "matched_fragments": 249, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter confluentis", "strain": "strain=HJM-18", "accession": "GCA_004785685.1", "taxid": 1697557, "species_taxid": 1697557, "relation_to_type": "type", "validated": true, "ani": 77.8571, "matched_fragments": 251, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter persicus", "strain": "strain=IBRC-M 10445", "accession": "GCA_900114155.1", "taxid": 930118, "species_taxid": 930118, "relation_to_type": "type", "validated": true, "ani": 77.8432, "matched_fragments": 282, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter arenosus", "strain": "strain=CAU 1620", "accession": "GCA_019264345.1", "taxid": 2856822, "species_taxid": 2856822, "relation_to_type": "type", "validated": true, "ani": 77.8383, "matched_fragments": 263, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter changyiensis", "strain": "strain=CLL7-20", "accession": "GCA_009193265.1", "taxid": 2604091, "species_taxid": 2604091, "relation_to_type": "type", "validated": true, "ani": 77.7488, "matched_fragments": 197, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter bryozoorum", "strain": "strain=DSM 15401", "accession": "GCA_023156245.1", "taxid": 256324, "species_taxid": 256324, "relation_to_type": "type", "validated": true, "ani": 77.6511, "matched_fragments": 205, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter caseinilyticus", "strain": "strain=M3-13", "accession": "GCA_011074955.1", "taxid": 2692195, "species_taxid": 2692195, "relation_to_type": "type", "validated": true, "ani": 77.5279, "matched_fragments": 188, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax marinus", "strain": "strain=R8-12", "accession": "GCA_025532125.1", "taxid": 1177169, "species_taxid": 1177169, "relation_to_type": "type", "validated": true, "ani": 75.8927, "matched_fragments": 67, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000372805.1", "gtdb_species": "s__Marinobacter gelidimuriae", "ani": 100.0, "matched_fragments": 1136, "total_fragments": 1147, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000169375.1", "gtdb_species": "s__Marinobacter sp000169375", "ani": 93.9484, "matched_fragments": 904, "total_fragments": 1147, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002563885.1", "gtdb_species": "s__Marinobacter sp002563885", "ani": 92.3284, "matched_fragments": 898, "total_fragments": 1147, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Marinobacter", "gelidimuriae" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }