{ "type": "genome", "identifier": "GCF_000373265.1", "organism": "Pontibacter roseus DSM 17521", "title": "Pontibacter roseus DSM 17521", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000373265.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441712", "wgs_master": "ARDO00000000.1", "refseq_category": "reference genome", "taxid": "1122967", "species_taxid": "336989", "organism_name": "Pontibacter roseus DSM 17521", "infraspecific_name": "strain=DSM 17521", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/23", "asm_name": "ASM37326v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000373265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/373/265/GCF_000373265.1_ASM37326v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4581480", "genome_size_ungapped": "4580463", "gc_percent": "52.500000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000373265.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4032", "protein_coding_gene_count": "3970", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-23", "dateModified": "2013-04-23", "datePublished": "2013-04-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Pontibacter roseus DSM 17521" ], "sample_taxid": [ "1122967" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"total_fragments": 1521, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pontibacter amylolyticus", "strain": "strain=CGMCC 1.12749", "accession": "GCA_014638845.1", "taxid": 1424080, "species_taxid": 1424080, "relation_to_type": "type", "validated": true, "ani": 80.5514, "matched_fragments": 882, "total_fragments": 1521, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter indicus", "strain": "strain=LP100", "accession": "GCA_900156345.1", "taxid": 1317125, "species_taxid": 1317125, "relation_to_type": "type", "validated": true, "ani": 80.4646, "matched_fragments": 870, "total_fragments": 1521, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter virosus", "strain": "strain=DSM 100231", "accession": "GCA_003096355.1", "taxid": 1765052, "species_taxid": 1765052, "relation_to_type": "type", "validated": true, "ani": 80.3737, "matched_fragments": 827, "total_fragments": 1521, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter ramchanderi", "strain": "strain=LP43", "accession": "GCA_002846395.1", "taxid": 1179743, "species_taxid": 1179743, "relation_to_type": "type", "validated": true, "ani": 80.2453, "matched_fragments": 808, "total_fragments": 1521, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter aquaedesilientis", "strain": "strain=JH31", "accession": "GCA_014773225.1", "taxid": 2766980, "species_taxid": 2766980, "relation_to_type": "type", "validated": true, "ani": 80.1167, "matched_fragments": 734, "total_fragments": 1521, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter lucknowensis", "strain": "strain=DM9", "accession": "GCA_900156415.1", "taxid": 1077936, "species_taxid": 1077936, "relation_to_type": "type", "validated": true, "ani": 80.0435, "matched_fragments": 778, "total_fragments": 1521, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter 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"GCA_000472485.1", "taxid": 323450, "species_taxid": 323450, "relation_to_type": "type", "validated": true, "ani": 78.3931, "matched_fragments": 550, "total_fragments": 1521, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter deserti", "strain": "strain=JC215", "accession": "GCA_023630255.1", "taxid": 1343896, "species_taxid": 1343896, "relation_to_type": "type", "validated": true, "ani": 77.8136, "matched_fragments": 317, "total_fragments": 1521, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rufibacter sediminis", "strain": "strain=CGMCC 1.16289", "accession": "GCA_024436355.1", "taxid": 2762756, "species_taxid": 2762756, "relation_to_type": "type", "validated": true, "ani": 76.4923, "matched_fragments": 245, "total_fragments": 1521, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000373265.1", 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80.4718, "matched_fragments": 869, "total_fragments": 1521, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003096355.1", "gtdb_species": "s__Pontibacter virosus", "ani": 80.3668, "matched_fragments": 828, "total_fragments": 1521, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002846395.1", "gtdb_species": "s__Pontibacter ramchanderi", "ani": 80.2419, "matched_fragments": 808, "total_fragments": 1521, 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