{
    "type": "genome",
    "identifier": "GCF_000373345.1",
    "organism": "Leptotrichia wadei DSM 19758",
    "title": "Leptotrichia wadei DSM 19758",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000373345.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02440426",
        "wgs_master": "ARDS00000000.1",
        "refseq_category": "na",
        "taxid": "1122174",
        "species_taxid": "157687",
        "organism_name": "Leptotrichia wadei DSM 19758",
        "infraspecific_name": "strain=DSM 19758",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/04/23",
        "asm_name": "ASM37334v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000373345.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/373/345/GCF_000373345.1_ASM37334v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2316529",
        "genome_size_ungapped": "2314249",
        "gc_percent": "29.500000",
        "replicon_count": "0",
        "scaffold_count": "64",
        "contig_count": "65",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000373345.1-RS_2024_05_15",
        "annotation_date": "2024-05-15",
        "total_gene_count": "2204",
        "protein_coding_gene_count": "2123",
        "non_coding_gene_count": "57",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-04-23",
    "dateModified": "2013-04-23",
    "datePublished": "2013-04-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Leptotrichia wadei DSM 19758"
        ],
        "sample_taxid": [
            "1122174"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.632 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2316529",
        "Number of Sequences": "64",
        "Longest Sequences (bp)": "206686",
        "N50 (bp)": "75496",
        "Gap Ratio (%)": "0.099502",
        "GCcontent (%)": "29.3",
        "Number of CDSs": "2095",
        "Average Protein Length": "307.3",
        "Coding Ratio (%)": "83.4",
        "Number of rRNAs": "6",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Leptotrichia wadei",
                "strain": "strain=DSM 19758",
                "accession": "GCA_000373345.1",
                "taxid": 157687,
                "species_taxid": 157687,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 731,
                "total_fragments": 735,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Leptotrichia wadei",
                "strain": "strain=JCM16777",
                "accession": "GCA_007990545.2",
                "taxid": 157687,
                "species_taxid": 157687,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9917,
                "matched_fragments": 729,
                "total_fragments": 735,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Leptotrichia shahii",
                "strain": "strain=JCM16776",
                "accession": "GCA_008327825.1",
                "taxid": 157691,
                "species_taxid": 157691,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.8619,
                "matched_fragments": 580,
                "total_fragments": 735,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptotrichia shahii",
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                "accession": "GCA_000373045.1",
                "taxid": 157691,
                "species_taxid": 157691,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.8468,
                "matched_fragments": 586,
                "total_fragments": 735,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptotrichia hofstadii",
                "strain": "strain=DSM 21651",
                "accession": "GCA_000428965.1",
                "taxid": 157688,
                "species_taxid": 157688,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.3969,
                "matched_fragments": 566,
                "total_fragments": 735,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptotrichia massiliensis",
                "strain": "strain=Marseille-P3007",
                "accession": "GCA_900104625.1",
                "taxid": 1852388,
                "species_taxid": 1852388,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.2043,
                "matched_fragments": 534,
                "total_fragments": 735,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptotrichia trevisanii",
                "strain": "strain=DSM 22070",
                "accession": "GCA_000482505.1",
                "taxid": 109328,
                "species_taxid": 109328,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.1898,
                "matched_fragments": 538,
                "total_fragments": 735,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptotrichia buccalis",
                "strain": "strain=DSM 1135",
                "accession": "GCA_000023905.1",
                "taxid": 40542,
                "species_taxid": 40542,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.9741,
                "matched_fragments": 526,
                "total_fragments": 735,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_007990545.2",
                "gtdb_species": "s__Leptotrichia wadei",
                "ani": 99.968,
                "matched_fragments": 730,
                "total_fragments": 735,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.52",
                "min_intra_species_ani": "96.88",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 7,
                "status": "conclusive"
            },
            {
                "accession": "GCF_007990445.1",
                "gtdb_species": "s__Leptotrichia wadei_A",
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                "matched_fragments": 600,
                "total_fragments": 735,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.03",
                "min_intra_species_ani": "96.85",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_008327825.1",
                "gtdb_species": "s__Leptotrichia shahii",
                "ani": 90.8619,
                "matched_fragments": 580,
                "total_fragments": 735,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
                "ani_circumscription_radius": 95.0,
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                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002240055.1",
                "gtdb_species": "s__Leptotrichia sp002240055",
                "ani": 85.6871,
                "matched_fragments": 395,
                "total_fragments": 735,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.99",
                "min_intra_species_ani": "98.99",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_007990525.1",
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                "mean_intra_species_ani": "98.32",
                "min_intra_species_ani": "96.65",
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                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000469385.1",
                "gtdb_species": "s__Leptotrichia sp000469385",
                "ani": 85.3008,
                "matched_fragments": 526,
                "total_fragments": 735,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_900104625.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
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                "mean_intra_species_ani": "96.80",
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            },
            {
                "accession": "GCF_007990635.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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            },
            {
                "accession": "GCF_000482505.1",
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                "matched_fragments": 539,
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            },
            {
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                "matched_fragments": 528,
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_018128245.1",
                "gtdb_species": "s__JABCPH02 sp013333235",
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                "total_fragments": 735,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__JABCPH02",
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                "mean_intra_species_ani": "97.39",
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                "num_clustered_genomes": 2,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.426,
        "cell_length": 0.64,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
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        "genome_size": 2369937.5,
        "gc_content": 29.603,
        "coding_genes": 2196.333,
        "rRNA16S_genes": 5.0,
        "tRNA_genes": 46.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
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        "anaerobic_respiration": 1.0,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Leptotrichia",
        "wadei",
        "DSM",
        "19758"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}