{
    "type": "genome",
    "identifier": "GCF_000373785.1",
    "organism": "Erysipelothrix tonsillarum DSM 14972",
    "title": "Erysipelothrix tonsillarum DSM 14972",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000373785.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02440433",
        "wgs_master": "AREO00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1121874",
        "species_taxid": "38402",
        "organism_name": "Erysipelothrix tonsillarum DSM 14972",
        "infraspecific_name": "strain=DSM 14972",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/04/23",
        "asm_name": "ASM37378v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000373785.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/373/785/GCF_000373785.1_ASM37378v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1931022",
        "genome_size_ungapped": "1930392",
        "gc_percent": "37.000000",
        "replicon_count": "0",
        "scaffold_count": "4",
        "contig_count": "6",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000373785.1-RS_2024_04_22",
        "annotation_date": "2024-04-22",
        "total_gene_count": "1849",
        "protein_coding_gene_count": "1773",
        "non_coding_gene_count": "65",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-04-23",
    "dateModified": "2013-04-23",
    "datePublished": "2013-04-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Erysipelothrix tonsillarum DSM 14972"
        ],
        "sample_taxid": [
            "1121874"
        ],
        "sample_host_organism": [
            "Sus scrofa"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan"
        ],
        "sample_host_location_id": [],
        "data_size": "0.545 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1931022",
        "Number of Sequences": "4",
        "Longest Sequences (bp)": "731061",
        "N50 (bp)": "454198",
        "Gap Ratio (%)": "0.033039",
        "GCcontent (%)": "36.8",
        "Number of CDSs": "1800",
        "Average Protein Length": "323.0",
        "Coding Ratio (%)": "90.3",
        "Number of rRNAs": "3",
        "Number of tRNAs": "55",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Erysipelothrix tonsillarum",
                "strain": "strain=DSM 14972",
                "accession": "GCA_000373785.1",
                "taxid": 38402,
                "species_taxid": 38402,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 641,
                "total_fragments": 641,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Erysipelothrix rhusiopathiae",
                "strain": "strain=NCTC8163",
                "accession": "GCA_900637845.1",
                "taxid": 1648,
                "species_taxid": 1648,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.0065,
                "matched_fragments": 402,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Erysipelothrix rhusiopathiae",
                "strain": "strain=ATCC 19414",
                "accession": "GCA_000160815.2",
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                "species_taxid": 1648,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8986,
                "matched_fragments": 409,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Erysipelothrix piscisicarius",
                "strain": "strain=15TAL0474",
                "accession": "GCA_003931795.1",
                "taxid": 2485784,
                "species_taxid": 2485784,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.6248,
                "matched_fragments": 374,
                "total_fragments": 641,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Erysipelothrix aquatica",
                "strain": "strain=VA92-K48",
                "accession": "GCA_009828775.2",
                "taxid": 2683714,
                "species_taxid": 2683714,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0871,
                "matched_fragments": 99,
                "total_fragments": 641,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Erysipelothrix urinaevulpis",
                "strain": "strain=165301687",
                "accession": "GCA_009828835.1",
                "taxid": 2683717,
                "species_taxid": 2683717,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5852,
                "matched_fragments": 76,
                "total_fragments": 641,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Erysipelothrix larvae",
                "strain": "strain=LV19",
                "accession": "GCA_001545095.1",
                "taxid": 1514105,
                "species_taxid": 1514105,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.518,
                "matched_fragments": 57,
                "total_fragments": 641,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.54,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCF_000373785.1",
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                "total_fragments": 641,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Erysipelothrix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900637845.1",
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                "total_fragments": 641,
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                "ani_circumscription_radius": 95.0,
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                "min_intra_species_ani": "96.63",
                "mean_intra_species_af": "0.95",
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                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.72",
                "min_intra_species_ani": "98.37",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_011400295.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_011299615.1",
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                "matched_fragments": 99,
                "total_fragments": 641,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Erysipelothrix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_001545095.1",
                "gtdb_species": "s__Erysipelothrix larvae",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Erysipelothrix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": 0.0,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 33.5,
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        "genome_size": 1931566.5,
        "gc_content": 36.8,
        "coding_genes": 1967.75,
        "rRNA16S_genes": 5.1,
        "tRNA_genes": 46.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Erysipelothrix",
        "tonsillarum",
        "DSM",
        "14972"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}