{
    "type": "genome",
    "identifier": "GCF_000373945.1",
    "organism": "Endozoicomonas elysicola DSM 22380",
    "title": "Endozoicomonas elysicola DSM 22380",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000373945.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02440436",
        "wgs_master": "AREW00000000.1",
        "refseq_category": "na",
        "taxid": "1121862",
        "species_taxid": "305900",
        "organism_name": "Endozoicomonas elysicola DSM 22380",
        "infraspecific_name": "strain=DSM 22380",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/04/23",
        "asm_name": "ASM37394v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000373945.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/373/945/GCF_000373945.1_ASM37394v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5545668",
        "genome_size_ungapped": "5545378",
        "gc_percent": "46.500000",
        "replicon_count": "0",
        "scaffold_count": "31",
        "contig_count": "33",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000373945.1-RS_2024_05_15",
        "annotation_date": "2024-05-15",
        "total_gene_count": "4635",
        "protein_coding_gene_count": "4528",
        "non_coding_gene_count": "88",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-04-23",
    "dateModified": "2013-04-23",
    "datePublished": "2013-04-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Endozoicomonas elysicola DSM 22380"
        ],
        "sample_taxid": [
            "1121862"
        ],
        "sample_host_organism": [
            "Elysia ornata"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.581 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5545668",
        "Number of Sequences": "31",
        "Longest Sequences (bp)": "895183",
        "N50 (bp)": "406323",
        "Gap Ratio (%)": "0.008655",
        "GCcontent (%)": "46.7",
        "Number of CDSs": "4530",
        "Average Protein Length": "336.5",
        "Coding Ratio (%)": "82.5",
        "Number of rRNAs": "5",
        "Number of tRNAs": "76",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Endozoicomonas elysicola",
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                "accession": "GCA_000373945.1",
                "taxid": 305900,
                "species_taxid": 305900,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1832,
                "total_fragments": 1834,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Endozoicomonas elysicola",
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                "accession": "GCA_000710775.1",
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                "species_taxid": 305900,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9926,
                "matched_fragments": 1831,
                "total_fragments": 1834,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Endozoicomonas atrinae",
                "strain": "strain=WP70",
                "accession": "GCA_001647025.2",
                "taxid": 1333660,
                "species_taxid": 1333660,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.6857,
                "matched_fragments": 1181,
                "total_fragments": 1834,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Endozoicomonas acroporae",
                "strain": "strain=Acr-14",
                "accession": "GCA_002864045.1",
                "taxid": 1701104,
                "species_taxid": 1701104,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1321,
                "matched_fragments": 794,
                "total_fragments": 1834,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Endozoicomonas ascidiicola",
                "strain": "strain=AVMART05",
                "accession": "GCA_001646945.1",
                "taxid": 1698521,
                "species_taxid": 1698521,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5312,
                "matched_fragments": 398,
                "total_fragments": 1834,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Endozoicomonas numazuensis",
                "strain": "strain=DSM 25634",
                "accession": "GCA_000722635.1",
                "taxid": 1137799,
                "species_taxid": 1137799,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2403,
                "matched_fragments": 173,
                "total_fragments": 1834,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000710775.1",
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                "matched_fragments": 1831,
                "total_fragments": 1834,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Endozoicomonadaceae;g__Endozoicomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCA_900299555.1",
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                "matched_fragments": 1231,
                "total_fragments": 1834,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Endozoicomonadaceae;g__Endozoicomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001647025.1",
                "gtdb_species": "s__Endozoicomonas atrinae",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Endozoicomonadaceae;g__Endozoicomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017744115.1",
                "gtdb_species": "s__Endozoicomonas sp017744115",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Endozoicomonadaceae;g__Endozoicomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.21",
                "min_intra_species_ani": "98.21",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_002864045.1",
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                "matched_fragments": 794,
                "total_fragments": 1834,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Endozoicomonadaceae;g__Endozoicomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.93",
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                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
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            },
            {
                "accession": "GCF_001646945.1",
                "gtdb_species": "s__Endozoicomonas ascidiicola",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Endozoicomonadaceae;g__Endozoicomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.76",
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                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 2,
                "status": "-"
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.198,
        "cell_length": 0.397,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 25.5,
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        "genome_size": 5575876.5,
        "gc_content": 46.7,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
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        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Endozoicomonas",
        "elysicola",
        "DSM",
        "22380"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}