{ "type": "genome", "identifier": "GCF_000374045.1", "organism": "Segetibacter koreensis DSM 18137", "title": "Segetibacter koreensis DSM 18137", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000374045.1", "bioproject": "PRJNA224116", "biosample": "SAMN02440437", "wgs_master": "ARFB00000000.1", "refseq_category": "reference genome", "taxid": "1123248", "species_taxid": "398037", "organism_name": "Segetibacter koreensis DSM 18137", "infraspecific_name": "strain=DSM 18137", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/23", "asm_name": "ASM37404v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000374045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/374/045/GCF_000374045.1_ASM37404v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6107890", "genome_size_ungapped": "6107205", "gc_percent": "37.500000", "replicon_count": "0", "scaffold_count": "73", "contig_count": "75", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000374045.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "5053", "protein_coding_gene_count": "4956", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-23", "dateModified": "2013-04-23", "datePublished": "2013-04-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Segetibacter koreensis DSM 18137" ], "sample_taxid": [ "1123248" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Korea" ], "sample_host_location_id": [], "data_size": "1.732 MB", "sample_ph_range": { "min": 7.0, "max": 7.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6107890", "Number of Sequences": "73", "Longest Sequences (bp)": "559288", "N50 (bp)": "245701", "Gap Ratio (%)": "0.014358", "GCcontent (%)": "37.4", "Number of CDSs": "4884", "Average Protein Length": "341.7", "Coding Ratio (%)": "82.0", "Number of rRNAs": "6", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Segetibacter koreensis", "strain": "strain=DSM 18137", "accession": "GCA_000374045.1", "taxid": 398037, "species_taxid": 398037, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrotalea sandarakina", "strain": "strain=DSM 23241", "accession": "GCA_003254115.1", "taxid": 1004304, "species_taxid": 1004304, "relation_to_type": "type", "validated": true, "ani": 75.9124, "matched_fragments": 61, "total_fragments": 1996, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrotalea flava", "strain": "strain=CCUG 51397", "accession": "GCA_001623405.1", "taxid": 714549, "species_taxid": 714549, "relation_to_type": "suspected-type", "validated": true, "ani": 75.8555, "matched_fragments": 62, "total_fragments": 1996, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnovirga soli", "strain": "strain=KCS-6", "accession": "GCA_013106755.1", "taxid": 2656915, "species_taxid": 2656915, "relation_to_type": "type", "validated": true, "ani": 75.7692, "matched_fragments": 71, "total_fragments": 1996, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanamia caeni", "strain": "strain=BO-59", "accession": "GCA_003721595.1", "taxid": 2294116, "species_taxid": 2294116, "relation_to_type": "type", "validated": true, "ani": 75.612, "matched_fragments": 80, "total_fragments": 1996, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000374045.1", "gtdb_species": "s__Segetibacter koreensis", "ani": 100.0, "matched_fragments": 1992, "total_fragments": 1996, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Segetibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_007991655.1", "gtdb_species": "s__Segetibacter aerophilus", "ani": 77.0255, 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