{ "type": "genome", "identifier": "GCF_000374065.1", "organism": "Spirosoma luteum DSM 19990", "title": "Spirosoma luteum DSM 19990", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000374065.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441024", "wgs_master": "ARFC00000000.1", "refseq_category": "reference genome", "taxid": "1123276", "species_taxid": "431553", "organism_name": "Spirosoma luteum DSM 19990", "infraspecific_name": "strain=DSM 19990", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/23", "asm_name": "ASM37406v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000374065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/374/065/GCF_000374065.1_ASM37406v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6613584", "genome_size_ungapped": "6608924", "gc_percent": "50.500000", "replicon_count": "0", "scaffold_count": "69", "contig_count": "74", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000374065.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "5595", "protein_coding_gene_count": "5487", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-23", "dateModified": "2013-04-23", "datePublished": "2013-04-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Spirosoma luteum DSM 19990" ], "sample_taxid": [ "1123276" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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2167, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Spirosoma spitsbergense", "strain": "strain=DSM 19989", "accession": "GCA_000374085.1", "taxid": 431554, "species_taxid": 431554, "relation_to_type": "type", "validated": true, "ani": 86.3995, "matched_fragments": 1591, "total_fragments": 2167, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma endophyticum", "strain": "strain=DSM 26130", "accession": "GCA_900112365.1", "taxid": 662367, "species_taxid": 662367, "relation_to_type": "type", "validated": true, "ani": 78.192, "matched_fragments": 528, "total_fragments": 2167, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma fluviale", "strain": "strain=DSM 29961", "accession": "GCA_900230225.1", "taxid": 1597977, "species_taxid": 1597977, "relation_to_type": "type", "validated": true, "ani": 77.488, "matched_fragments": 593, "total_fragments": 2167, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma arboris", "strain": "strain=HMF4905", "accession": "GCA_009754945.1", "taxid": 2682092, "species_taxid": 2682092, "relation_to_type": "type", "validated": true, "ani": 77.3613, "matched_fragments": 495, "total_fragments": 2167, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma radiotolerans", "strain": "strain=DG5A", "accession": "GCA_000974425.1", "taxid": 1379870, "species_taxid": 1379870, "relation_to_type": "type", "validated": true, "ani": 77.2478, "matched_fragments": 515, "total_fragments": 2167, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma taeanense", "strain": "strain=TS118", "accession": "GCA_013127955.1", "taxid": 2735870, "species_taxid": 2735870, "relation_to_type": "type", "validated": true, "ani": 77.2146, "matched_fragments": 427, "total_fragments": 2167, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma utsteinense", "strain": "strain=LMG 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2167, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000374065.1", "gtdb_species": "s__Spirosoma luteum", "ani": 100.0, "matched_fragments": 2164, "total_fragments": 2167, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000374085.1", "gtdb_species": "s__Spirosoma spitsbergense", "ani": 86.4014, "matched_fragments": 1590, "total_fragments": 2167, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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