{ "type": "genome", "identifier": "GCF_000374145.1", "organism": "Neomegalonema perideroedes DSM 15528", "title": "Neomegalonema perideroedes DSM 15528", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000374145.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441696", "wgs_master": "ARFG00000000.1", "refseq_category": "reference genome", "taxid": "1122218", "species_taxid": "217219", "organism_name": "Neomegalonema perideroedes DSM 15528", "infraspecific_name": "strain=DSM 15528", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/23", "asm_name": "ASM37414v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000374145.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/374/145/GCF_000374145.1_ASM37414v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3409949", "genome_size_ungapped": "3408977", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "17", "contig_count": "22", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000374145.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3120", "protein_coding_gene_count": "3038", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-23", "dateModified": "2013-04-23", "datePublished": "2013-04-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Neomegalonema perideroedes DSM 15528" ], "sample_taxid": [ "1122218" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Denmark" ], "sample_host_location_id": [], "data_size": "0.918 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3409949", "Number of Sequences": "17", "Longest Sequences (bp)": "1522649", "N50 (bp)": "1196865", "Gap Ratio (%)": "0.028651", "GCcontent (%)": "67.2", "Number of CDSs": "3075", "Average Protein Length": "332.0", "Coding Ratio (%)": "89.8", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Neomegalonema perideroedes", "strain": "strain=DSM 15528", "accession": "GCA_000374145.1", "taxid": 217219, "species_taxid": 217219, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter flagellatus", "strain": "strain=SYSU G03088", "accession": "GCA_008271465.1", "taxid": 2593021, "species_taxid": 2593021, "relation_to_type": "type", "validated": true, "ani": 76.418, "matched_fragments": 158, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioclava marina", "strain": "strain=11.10-0-13", "accession": "GCA_002020135.1", "taxid": 1915077, "species_taxid": 1915077, "relation_to_type": "type", "validated": true, "ani": 76.391, "matched_fragments": 143, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola algicola", "strain": "strain=ETT8", "accession": "GCA_010915705.1", "taxid": 2709381, "species_taxid": 2709381, "relation_to_type": "type", "validated": true, "ani": 76.3379, "matched_fragments": 116, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubellimicrobium aerolatum", "strain": "strain=DSM 19297", "accession": "GCA_017872975.1", "taxid": 490979, "species_taxid": 490979, "relation_to_type": "type", "validated": true, "ani": 76.3285, "matched_fragments": 196, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Albimonas pacifica", "strain": "strain=CGMCC 1.11030", "accession": "GCA_900113695.1", "taxid": 1114924, "species_taxid": 1114924, "relation_to_type": "type", "validated": true, "ani": 76.2927, "matched_fragments": 289, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas cavernae", "strain": "strain=K2R01-6", "accession": "GCA_003590775.1", "taxid": 2320861, "species_taxid": 2320861, "relation_to_type": "type", "validated": true, "ani": 76.2798, "matched_fragments": 81, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amaricoccus solimangrovi", 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