{ "type": "genome", "identifier": "GCF_000374305.1", "organism": "Actinomadura flavalba DSM 45200", "title": "Actinomadura flavalba DSM 45200", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000374305.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441028", "wgs_master": "ARFO00000000.1", "refseq_category": "reference genome", "taxid": "561175", "species_taxid": "1120938", "organism_name": "Actinomadura flavalba DSM 45200", "infraspecific_name": "strain=DSM 45200", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/23", "asm_name": "ASM37430v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000374305.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/374/305/GCF_000374305.1_ASM37430v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6167782", "genome_size_ungapped": "6167487", "gc_percent": "73.500000", "replicon_count": "0", "scaffold_count": "22", "contig_count": "24", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000374305.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "5718", "protein_coding_gene_count": "5623", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-23", "dateModified": "2013-04-23", "datePublished": "2013-04-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomadura flavalba DSM 45200" ], "sample_taxid": [ "561175" ], "sample_host_organism": [ "Maytenus 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2045, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura nitritigenes", "strain": "strain=L46", "accession": "GCA_017573545.1", "taxid": 134602, "species_taxid": 134602, "relation_to_type": "type", "validated": true, "ani": 81.4953, "matched_fragments": 1337, "total_fragments": 2045, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura violacea", "strain": "strain=LCR2-06", "accession": "GCA_017573465.1", "taxid": 2819934, "species_taxid": 2819934, "relation_to_type": "type", "validated": true, "ani": 81.4925, "matched_fragments": 1392, "total_fragments": 2045, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rubrisoli", "strain": "strain=H3C3", "accession": "GCA_004349215.1", "taxid": 2530368, "species_taxid": 2530368, "relation_to_type": "type", "validated": true, "ani": 81.3913, "matched_fragments": 1181, "total_fragments": 2045, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura litoris", "strain": "strain=NEAU-AAG5", "accession": "GCA_009733595.1", "taxid": 2678616, "species_taxid": 2678616, "relation_to_type": "type", "validated": true, "ani": 81.3134, "matched_fragments": 1277, "total_fragments": 2045, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura darangshiensis", "strain": "strain=DSM 45941", "accession": "GCA_004349235.1", "taxid": 705336, "species_taxid": 705336, "relation_to_type": "type", "validated": true, "ani": 81.2701, "matched_fragments": 1215, "total_fragments": 2045, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura graeca", "strain": "strain=32-07", "accession": "GCA_019175365.1", "taxid": 2750812, "species_taxid": 2750812, "relation_to_type": "type", "validated": true, "ani": 81.0872, "matched_fragments": 1222, "total_fragments": 2045, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rupiterrae", "strain": "strain=DSM 45251", "accession": "GCA_024172125.1", "taxid": 559627, "species_taxid": 559627, "relation_to_type": "type", "validated": true, "ani": 81.0374, "matched_fragments": 1256, "total_fragments": 2045, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura roseirufa", "strain": "", "accession": "GCA_900659635.1", "taxid": 2094049, "species_taxid": 2094049, "relation_to_type": "type", "validated": true, "ani": 80.9236, "matched_fragments": 1123, "total_fragments": 2045, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura spongiicola", "strain": "strain=LHW52907", "accession": "GCA_003432485.1", "taxid": 2303421, "species_taxid": 2303421, "relation_to_type": "type", "validated": true, "ani": 80.7201, "matched_fragments": 1117, "total_fragments": 2045, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 7.41, "strain_heterogeneity": 81.82 }, 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