{
    "type": "genome",
    "identifier": "GCF_000374385.1",
    "organism": "Brevibacillus laterosporus DSM 25",
    "title": "Brevibacillus laterosporus DSM 25",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000374385.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02440440",
        "wgs_master": "ARFS00000000.1",
        "refseq_category": "na",
        "taxid": "1121121",
        "species_taxid": "1465",
        "organism_name": "Brevibacillus laterosporus DSM 25",
        "infraspecific_name": "strain=DSM 25",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/04/23",
        "asm_name": "ASM37438v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000374385.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/374/385/GCF_000374385.1_ASM37438v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5278007",
        "genome_size_ungapped": "5274658",
        "gc_percent": "40.500000",
        "replicon_count": "0",
        "scaffold_count": "69",
        "contig_count": "73",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000374385.1-RS_2024_05_15",
        "annotation_date": "2024-05-15",
        "total_gene_count": "4920",
        "protein_coding_gene_count": "4722",
        "non_coding_gene_count": "105",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-04-23",
    "dateModified": "2013-04-23",
    "datePublished": "2013-04-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Brevibacillus laterosporus DSM 25"
        ],
        "sample_taxid": [
            "1121121"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.509 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5278007",
        "Number of Sequences": "69",
        "Longest Sequences (bp)": "253088",
        "N50 (bp)": "117671",
        "Gap Ratio (%)": "0.063452",
        "GCcontent (%)": "40.5",
        "Number of CDSs": "4839",
        "Average Protein Length": "305.8",
        "Coding Ratio (%)": "84.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "87",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Brevibacillus laterosporus",
                "strain": "strain=DSM 25",
                "accession": "GCA_000374385.1",
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                "species_taxid": 1465,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1715,
                "total_fragments": 1719,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Brevibacillus laterosporus",
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                "accession": "GCA_002706795.1",
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                "species_taxid": 1465,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9962,
                "matched_fragments": 1718,
                "total_fragments": 1719,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Brevibacillus fluminis",
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                "accession": "GCA_003710825.1",
                "taxid": 511487,
                "species_taxid": 511487,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.049,
                "matched_fragments": 65,
                "total_fragments": 1719,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevibacillus choshinensis",
                "strain": "strain=DSM 8552",
                "accession": "GCA_001420695.1",
                "taxid": 54911,
                "species_taxid": 54911,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5417,
                "matched_fragments": 79,
                "total_fragments": 1719,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevibacillus nitrificans",
                "strain": "strain=JCM 15774",
                "accession": "GCA_003710965.1",
                "taxid": 651560,
                "species_taxid": 651560,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1893,
                "matched_fragments": 63,
                "total_fragments": 1719,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevibacillus porteri",
                "strain": "strain=NRRL B-41110",
                "accession": "GCA_003013475.1",
                "taxid": 2126350,
                "species_taxid": 2126350,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.945,
                "matched_fragments": 90,
                "total_fragments": 1719,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 8.33,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002706795.1",
                "gtdb_species": "s__Brevibacillus_B laterosporus",
                "ani": 99.9962,
                "matched_fragments": 1718,
                "total_fragments": 1719,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.75",
                "min_intra_species_ani": "97.98",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 16,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000219535.2",
                "gtdb_species": "s__Brevibacillus_B halotolerans",
                "ani": 89.2643,
                "matched_fragments": 1456,
                "total_fragments": 1719,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.52",
                "min_intra_species_ani": "96.28",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 14,
                "status": "-"
            },
            {
                "accession": "GCF_007833815.1",
                "gtdb_species": "s__Brevibacillus_B laterosporus_D",
                "ani": 87.1261,
                "matched_fragments": 1394,
                "total_fragments": 1719,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.56",
                "min_intra_species_ani": "97.15",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_003710825.1",
                "gtdb_species": "s__Brevibacillus_D fluminis",
                "ani": 78.0579,
                "matched_fragments": 66,
                "total_fragments": 1719,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000503775.1",
                "gtdb_species": "s__Brevibacillus panacihumi_A",
                "ani": 77.9096,
                "matched_fragments": 60,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001420695.1",
                "gtdb_species": "s__Brevibacillus choshinensis",
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                "total_fragments": 1719,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003013475.1",
                "gtdb_species": "s__Brevibacillus porteri",
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                "matched_fragments": 87,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.63",
                "min_intra_species_ani": "95.52",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 7,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.301,
        "doubling_h": 0.285,
        "growth_tmp": 33.75,
        "optimum_tmp": 37.0,
        "optimum_ph": 6.585,
        "genome_size": 5210848.923,
        "gc_content": 40.939,
        "coding_genes": 4422.4,
        "rRNA16S_genes": 12.0,
        "tRNA_genes": 112.0,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Brevibacillus",
        "laterosporus",
        "DSM",
        "25"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}