{ "type": "genome", "identifier": "GCF_000374405.1", "organism": "Riemerella columbina DSM 16469", "title": "Riemerella columbina DSM 16469", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000374405.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441030", "wgs_master": "ARFT00000000.1", "refseq_category": "reference genome", "taxid": "1123058", "species_taxid": "103810", "organism_name": "Riemerella columbina DSM 16469", "infraspecific_name": "strain=DSM 16469", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/23", "asm_name": "ASM37440v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000374405.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/374/405/GCF_000374405.1_ASM37440v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2436793", "genome_size_ungapped": "2436368", "gc_percent": "36.000000", "replicon_count": "0", "scaffold_count": "67", "contig_count": "69", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000374405.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "2461", "protein_coding_gene_count": "2361", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-23", "dateModified": "2013-04-23", "datePublished": "2013-04-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Riemerella columbina DSM 16469" ], "sample_taxid": [ "1123058" ], "sample_host_organism": [ "pigeons" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "0.687 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2436793", "Number of Sequences": "67", "Longest Sequences (bp)": "276778", "N50 (bp)": "116206", "Gap Ratio (%)": "0.022242", "GCcontent (%)": "36.0", "Number of CDSs": "2332", "Average Protein Length": "307.3", "Coding Ratio (%)": "88.2", "Number of rRNAs": "3", "Number of tRNAs": "37", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Riemerella columbina", "strain": "strain=DSM 16469", "accession": "GCA_000374405.1", "taxid": 103810, "species_taxid": 103810, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 778, "total_fragments": 778, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Riemerella anatipestifer", "strain": "strain=NCTC11014", "accession": "GCA_900186945.1", "taxid": 34085, "species_taxid": 34085, "relation_to_type": "type", "validated": true, "ani": 78.1432, "matched_fragments": 193, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Riemerella anatipestifer", "strain": "strain=ATCC 11845", "accession": "GCA_000252855.1", "taxid": 34085, "species_taxid": 34085, "relation_to_type": "type", "validated": true, "ani": 78.1298, "matched_fragments": 193, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Riemerella anatipestifer", "strain": "strain=DSM 15868", "accession": "GCA_000183155.1", "taxid": 34085, "species_taxid": 34085, "relation_to_type": "type", "validated": true, "ani": 78.1285, "matched_fragments": 197, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cloacibacterium normanense", "strain": "strain=NRS-1", "accession": "GCA_001747495.1", "taxid": 237258, "species_taxid": 237258, "relation_to_type": "type", "validated": true, "ani": 77.6075, "matched_fragments": 116, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium oncorhynchi", "strain": "strain=701B-08", "accession": "GCA_002899895.2", "taxid": 741074, "species_taxid": 741074, "relation_to_type": "type", "validated": true, "ani": 77.5869, "matched_fragments": 71, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cloacibacterium rupense", "strain": "strain=CGMCC 1.7656", "accession": "GCA_014645495.1", "taxid": 517423, "species_taxid": 517423, "relation_to_type": "type", "validated": true, "ani": 77.3181, "matched_fragments": 116, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium oranimense", "strain": "strain=DSM 19055", "accession": "GCA_900129755.1", "taxid": 421058, "species_taxid": 421058, "relation_to_type": "type", "validated": true, "ani": 77.296, "matched_fragments": 73, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ureilyticum", "strain": "strain=DSM 18017", "accession": "GCA_900156735.1", "taxid": 373668, "species_taxid": 373668, "relation_to_type": "type", "validated": true, "ani": 77.2795, "matched_fragments": 84, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium fistulae", "strain": "strain=CECT 9393", "accession": "GCA_902729325.1", "taxid": 2675058, "species_taxid": 2675058, "relation_to_type": "type", "validated": true, "ani": 77.0267, "matched_fragments": 100, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium schmidteae", "strain": "strain=Marseille-P9602", "accession": "GCA_903166575.1", "taxid": 2730404, "species_taxid": 2730404, "relation_to_type": "type", "validated": true, "ani": 76.9712, "matched_fragments": 100, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium pennae", "strain": "strain=1_F178", "accession": "GCA_003385515.1", "taxid": 2258962, "species_taxid": 2258962, "relation_to_type": "type", "validated": true, "ani": 76.9585, "matched_fragments": 79, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium scophthalmum", "strain": "strain=DSM 16779", "accession": "GCA_900143185.1", "taxid": 59733, "species_taxid": 59733, "relation_to_type": "type", "validated": true, "ani": 76.7776, "matched_fragments": 94, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistella gelatinilytica", "strain": "strain=G5-32", "accession": 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