{ "type": "genome", "identifier": "GCF_000375445.1", "organism": "Novosphingobium nitrogenifigens DSM 19370", "title": "Novosphingobium nitrogenifigens DSM 19370", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000375445.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441732", "wgs_master": "AQWK00000000.1", "refseq_category": "na", "taxid": "983920", "species_taxid": "378548", "organism_name": "Novosphingobium nitrogenifigens DSM 19370", "infraspecific_name": "strain=DSM 19370", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/20", "asm_name": "ASM37544v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000375445.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/375/445/GCF_000375445.1_ASM37544v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4148973", "genome_size_ungapped": "4148973", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "48", "contig_count": "48", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000375445.1-RS_2024_05_15", "annotation_date": "2024-05-15", "total_gene_count": "3805", "protein_coding_gene_count": "3703", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-20", "dateModified": "2013-04-20", "datePublished": "2013-04-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Novosphingobium nitrogenifigens DSM 19370" ], "sample_taxid": [ "983920" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand" ], "sample_host_location_id": [], "data_size": "1.147 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4148973", "Number of Sequences": "48", "Longest Sequences (bp)": "586211", "N50 (bp)": "378837", "Gap Ratio (%)": "0.001567", "GCcontent (%)": "64.0", "Number of CDSs": "3721", "Average Protein Length": "335.7", "Coding Ratio (%)": "90.3", "Number of rRNAs": "4", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Novosphingobium nitrogenifigens", "strain": "strain=DSM 19370", "accession": "GCA_000375445.1", "taxid": 378548, "species_taxid": 378548, 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"status": "below_threshold" }, { "organism_name": "Novosphingobium subterraneum", "strain": "strain=DSM 12447", "accession": "GCA_000807925.1", "taxid": 48936, "species_taxid": 48936, "relation_to_type": "type", "validated": true, "ani": 79.0955, "matched_fragments": 426, "total_fragments": 1362, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium sediminis", "strain": "strain=NBRC 106119", "accession": "GCA_007991615.1", "taxid": 707214, "species_taxid": 707214, "relation_to_type": "type", "validated": true, "ani": 79.0009, "matched_fragments": 454, "total_fragments": 1362, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium fuchskuhlense", "strain": "strain=FNE08-7", "accession": "GCA_001519075.1", "taxid": 1117702, "species_taxid": 1117702, "relation_to_type": "type", "validated": true, "ani": 78.9107, "matched_fragments": 444, "total_fragments": 1362, "ani_threshold": 95, "status": "below_threshold" }, { 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