{ "type": "genome", "identifier": "GCF_000375485.1", "organism": "Desulfovibrio oxyclinae DSM 11498", "title": "Desulfovibrio oxyclinae DSM 11498", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000375485.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441051", "wgs_master": "AQXE00000000.1", "refseq_category": "reference genome", "taxid": "1121459", "species_taxid": "63560", "organism_name": "Desulfovibrio oxyclinae DSM 11498", "infraspecific_name": "strain=DSM 11498", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/20", "asm_name": "ASM37548v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000375485.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/375/485/GCF_000375485.1_ASM37548v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3324581", "genome_size_ungapped": "3324581", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "32", "contig_count": "32", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000375485.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "3133", "protein_coding_gene_count": "3057", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-20", "dateModified": "2013-04-20", "datePublished": "2013-04-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfovibrio oxyclinae DSM 11498" ], "sample_taxid": [ "1121459" ], "sample_host_organism": [], 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"status": "below_threshold" }, { "organism_name": "Desulfovibrio vulgaris", "strain": "strain=Hildenborough", "accession": "GCA_902167245.1", "taxid": 881, "species_taxid": 881, "relation_to_type": "type", "validated": true, "ani": 76.6834, "matched_fragments": 120, "total_fragments": 1091, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fundidesulfovibrio magnetotacticus", "strain": "strain=FSS-1", "accession": "GCA_013019105.1", "taxid": 2730080, "species_taxid": 2730080, "relation_to_type": "type", "validated": true, "ani": 76.6455, "matched_fragments": 157, "total_fragments": 1091, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfocurvibacter africanus subsp. africanus", "strain": "strain=DSM 2603", "accession": "GCA_000422545.1", "taxid": 1511600, "species_taxid": 873, "relation_to_type": "type", "validated": true, "ani": 76.5351, "matched_fragments": 131, "total_fragments": 1091, "ani_threshold": 95, "status": "below_threshold" 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