{
    "type": "genome",
    "identifier": "GCF_000376125.1",
    "organism": "Martelella mediterranea DSM 17316",
    "title": "Martelella mediterranea DSM 17316",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000376125.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02441730",
        "wgs_master": "AQWH00000000.1",
        "refseq_category": "na",
        "taxid": "1122214",
        "species_taxid": "293089",
        "organism_name": "Martelella mediterranea DSM 17316",
        "infraspecific_name": "strain=MACL11",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/04/20",
        "asm_name": "ASM37612v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000376125.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/376/125/GCF_000376125.1_ASM37612v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5643744",
        "genome_size_ungapped": "5643744",
        "gc_percent": "62.500000",
        "replicon_count": "0",
        "scaffold_count": "75",
        "contig_count": "75",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-01-28",
        "total_gene_count": "5315",
        "protein_coding_gene_count": "5146",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-04-20",
    "dateModified": "2013-04-20",
    "datePublished": "2013-04-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Martelella mediterranea DSM 17316"
        ],
        "sample_taxid": [
            "1122214"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Spain"
        ],
        "sample_host_location_id": [],
        "data_size": "1.571 MB",
        "sample_ph_range": {
            "min": 5085.0,
            "max": 5085.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5643744",
        "Number of Sequences": "75",
        "Longest Sequences (bp)": "376284",
        "N50 (bp)": "161034",
        "Gap Ratio (%)": "0.000656",
        "GCcontent (%)": "62.4",
        "Number of CDSs": "5195",
        "Average Protein Length": "320.4",
        "Coding Ratio (%)": "88.5",
        "Number of rRNAs": "2",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Martelella mediterranea",
                "strain": "strain=DSM 17316",
                "accession": "GCA_000376125.1",
                "taxid": 293089,
                "species_taxid": 293089,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1842,
                "total_fragments": 1847,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Martelella mediterranea",
                "strain": "strain=MACL11",
                "accession": "GCA_002043005.1",
                "taxid": 293089,
                "species_taxid": 293089,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9948,
                "matched_fragments": 1844,
                "total_fragments": 1847,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Martelella limonii",
                "strain": "strain=NBRC 109441",
                "accession": "GCA_013344475.1",
                "taxid": 1647649,
                "species_taxid": 1647649,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.0855,
                "matched_fragments": 1056,
                "total_fragments": 1847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Martelella lutilitoris",
                "strain": "strain=GH2-6",
                "accession": "GCA_005924265.1",
                "taxid": 2583532,
                "species_taxid": 2583532,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.3427,
                "matched_fragments": 916,
                "total_fragments": 1847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Martelella radicis",
                "strain": "strain=DSM 28101",
                "accession": "GCA_014196625.1",
                "taxid": 1397476,
                "species_taxid": 1397476,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.2463,
                "matched_fragments": 943,
                "total_fragments": 1847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Martelella endophytica",
                "strain": "strain=YC6887",
                "accession": "GCA_000960975.1",
                "taxid": 1486262,
                "species_taxid": 1486262,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1772,
                "matched_fragments": 907,
                "total_fragments": 1847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella pollutisoli",
                "strain": "strain=KCTC 52677",
                "accession": "GCA_024609765.1",
                "taxid": 2250594,
                "species_taxid": 2250594,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9074,
                "matched_fragments": 532,
                "total_fragments": 1847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella yambaruensis",
                "strain": "strain=DSM 18801",
                "accession": "GCA_022899355.1",
                "taxid": 415996,
                "species_taxid": 415996,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8352,
                "matched_fragments": 583,
                "total_fragments": 1847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella zoogloeoides",
                "strain": "strain=ATCC 19623",
                "accession": "GCA_020883495.1",
                "taxid": 352475,
                "species_taxid": 352475,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7781,
                "matched_fragments": 515,
                "total_fragments": 1847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ciceribacter ferrooxidans",
                "strain": "strain=F8825",
                "accession": "GCA_004137355.1",
                "taxid": 2509717,
                "species_taxid": 2509717,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4593,
                "matched_fragments": 426,
                "total_fragments": 1847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella curvata",
                "strain": "strain=C3",
                "accession": "GCA_022899935.1",
                "taxid": 1817964,
                "species_taxid": 1817964,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4171,
                "matched_fragments": 499,
                "total_fragments": 1847,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002043005.1",
                "gtdb_species": "s__Martelella mediterranea",
                "ani": 99.9948,
                "matched_fragments": 1844,
                "total_fragments": 1847,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Martelella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.32",
                "min_intra_species_ani": "95.96",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_013459645.1",
                "gtdb_species": "s__Martelella sp013459645",
                "ani": 88.6365,
                "matched_fragments": 1324,
                "total_fragments": 1847,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Martelella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_013344475.1",
                "gtdb_species": "s__Martelella limonii",
                "ani": 85.0614,
                "matched_fragments": 1058,
                "total_fragments": 1847,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Martelella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001578105.1",
                "gtdb_species": "s__Martelella sp001578105",
                "ani": 84.1121,
                "matched_fragments": 1002,
                "total_fragments": 1847,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Martelella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.55",
                "min_intra_species_ani": "95.11",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_005924265.1",
                "gtdb_species": "s__Martelella lutilitoris",
                "ani": 83.3465,
                "matched_fragments": 915,
                "total_fragments": 1847,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Martelella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014196625.1",
                "gtdb_species": "s__Martelella radicis",
                "ani": 83.2368,
                "matched_fragments": 943,
                "total_fragments": 1847,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Martelella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000960975.1",
                "gtdb_species": "s__Martelella endophytica",
                "ani": 83.1317,
                "matched_fragments": 912,
                "total_fragments": 1847,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Martelella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003001975.1",
                "gtdb_species": "s__Martelella mediterranea_A",
                "ani": 82.7491,
                "matched_fragments": 864,
                "total_fragments": 1847,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Martelella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.01,
        "cell_length": 0.13,
        "doubling_h": null,
        "growth_tmp": 29.0,
        "optimum_tmp": 28.0,
        "optimum_ph": 7.0,
        "genome_size": 5461304.4,
        "gc_content": 62.392,
        "coding_genes": 5143.0,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 48.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Martelella",
        "mediterranea",
        "DSM",
        "17316"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}