{ "type": "genome", "identifier": "GCF_000376265.1", "organism": "Thermus igniterrae ATCC 700962", "title": "Thermus igniterrae ATCC 700962", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000376265.1", "bioproject": "PRJNA224116", "biosample": "SAMN02440410", "wgs_master": "AQWU00000000.1", "refseq_category": "reference genome", "taxid": "1123388", "species_taxid": "88189", "organism_name": "Thermus igniterrae ATCC 700962", "infraspecific_name": "strain=ATCC 700962", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/20", "asm_name": "ASM37626v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000376265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/376/265/GCF_000376265.1_ASM37626v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2225983", "genome_size_ungapped": "2225983", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "74", "contig_count": "74", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000376265.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "2357", "protein_coding_gene_count": "2250", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-20", "dateModified": "2013-04-20", "datePublished": "2013-04-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Thermus igniterrae ATCC 700962" ], "sample_taxid": [ "1123388" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Iceland" ], "sample_host_location_id": [], "data_size": "0.593 MB", "sample_ph_range": { "min": 7585.0, "max": 7585.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2225983", "Number of Sequences": "74", "Longest Sequences (bp)": "121132", "N50 (bp)": "62194", "Gap Ratio (%)": "0.002111", "GCcontent (%)": "68.8", "Number of CDSs": "2249", "Average Protein Length": "308.8", "Coding Ratio (%)": "93.6", "Number of rRNAs": "2", "Number of tRNAs": "46", "Number of CRISPRs": "10" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thermus igniterrae", "strain": "strain=ATCC 700962", "accession": "GCA_000376265.1", "taxid": 88189, "species_taxid": 88189, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 699, "total_fragments": 704, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Thermus arciformis", "strain": "strain=CGMCC 1.6992", "accession": "GCA_900102145.1", "taxid": 482827, "species_taxid": 482827, "relation_to_type": "type", "validated": true, "ani": 86.9604, "matched_fragments": 576, "total_fragments": 704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus arciformis", "strain": "strain=JCM 15153", "accession": "GCA_022556335.1", "taxid": 482827, "species_taxid": 482827, "relation_to_type": "type", "validated": true, "ani": 86.8086, "matched_fragments": 584, "total_fragments": 704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus caliditerrae", "strain": "strain=YIM 77925", "accession": "GCA_021462525.1", "taxid": 1330700, "species_taxid": 1330700, "relation_to_type": "type", "validated": true, "ani": 86.5802, "matched_fragments": 585, "total_fragments": 704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus thermamylovorans", "strain": "strain=CFH 72773T", "accession": "GCA_004307015.1", "taxid": 2509362, "species_taxid": 2509362, "relation_to_type": "type", "validated": true, "ani": 86.4604, "matched_fragments": 578, "total_fragments": 704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus aquaticus", "strain": "strain=YT-1", "accession": "GCA_001280255.1", "taxid": 271, "species_taxid": 271, "relation_to_type": "type", "validated": true, "ani": 86.4561, "matched_fragments": 561, "total_fragments": 704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus parvatiensis", "strain": "strain=RL", "accession": "GCA_001535545.1", "taxid": 456163, "species_taxid": 456163, "relation_to_type": "type", "validated": true, "ani": 86.2383, "matched_fragments": 528, "total_fragments": 704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus parvatiensis", "strain": 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