{ "type": "genome", "identifier": "GCF_000376285.1", "organism": "Clostridioides difficile ATCC 9689 = DSM 1296", "title": "Clostridioides difficile ATCC 9689 = DSM 1296", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000376285.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441391", "wgs_master": "AQWV00000000.1", "refseq_category": "na", "taxid": "1121308", "species_taxid": "1496", "organism_name": "Clostridioides difficile ATCC 9689 = DSM 1296", "infraspecific_name": "strain=ATCC 9689", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/20", "asm_name": "ASM37628v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000376285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/376/285/GCF_000376285.1_ASM37628v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4207674", "genome_size_ungapped": "4207674", "gc_percent": "28.500000", "replicon_count": "0", "scaffold_count": "70", "contig_count": "70", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-28", "total_gene_count": "3955", "protein_coding_gene_count": "3855", "non_coding_gene_count": "43", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-20", "dateModified": "2013-04-20", "datePublished": "2013-04-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridioides difficile ATCC 9689 = DSM 1296" ], "sample_taxid": [ "1121308" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "1.143 MB", "sample_ph_range": { "min": 7376.0, "max": 7376.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4207674", "Number of Sequences": "70", "Longest Sequences (bp)": "488912", "N50 (bp)": "211658", "Gap Ratio (%)": "0.000974", "GCcontent (%)": "28.4", "Number of CDSs": "3889", "Average Protein Length": "299.5", "Coding Ratio (%)": "83.0", "Number of rRNAs": "4", "Number of tRNAs": "24", "Number of CRISPRs": "9" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridioides difficile", "strain": "strain=ATCC 9689", "accession": "GCA_000376285.1", "taxid": 1496, 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