{ "tc_result": [ { "organism_name": "Campylobacter curvus", "strain": "strain=DSM 6644", "accession": "GCA_000376325.1", "taxid": 200, "species_taxid": 200, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 648, "total_fragments": 648, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Campylobacter curvus", "strain": "strain=FDAARGOS_1547", "accession": "GCA_020736225.1", "taxid": 200, "species_taxid": 200, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9999, "matched_fragments": 648, "total_fragments": 648, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Campylobacter curvus", "strain": "strain=ATCC 35224", "accession": "GCA_013372125.1", "taxid": 200, "species_taxid": 200, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9987, "matched_fragments": 647, "total_fragments": 648, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Campylobacter curvus", "strain": "strain=ATCC 35224", "accession": "GCA_012978875.1", "taxid": 200, "species_taxid": 200, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9799, "matched_fragments": 637, "total_fragments": 648, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Campylobacter massiliensis", "strain": "strain=Marseille-Q3452", "accession": "GCA_014253065.1", "taxid": 2762557, "species_taxid": 2762557, "relation_to_type": "type", "validated": true, "ani": 78.5408, "matched_fragments": 244, "total_fragments": 648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter showae", "strain": "strain=ATCC 51146", "accession": "GCA_004803815.1", "taxid": 204, "species_taxid": 204, "relation_to_type": "suspected-type", "validated": true, "ani": 78.5273, "matched_fragments": 239, "total_fragments": 648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter concisus", "strain": "strain=ATCC 33237", "accession": "GCA_001298465.1", "taxid": 199, "species_taxid": 199, "relation_to_type": "suspected-type", "validated": true, "ani": 78.0329, "matched_fragments": 242, "total_fragments": 648, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013372125.1", "gtdb_species": "s__Campylobacter_A curvus", "ani": 99.9987, "matched_fragments": 647, "total_fragments": 648, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.39", "min_intra_species_ani": "95.49", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 16, "status": "conclusive" }, { "accession": "GCF_902460415.1", "gtdb_species": "s__Campylobacter_A concisus_Y", "ani": 78.6815, "matched_fragments": 230, "total_fragments": 648, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.32", "min_intra_species_ani": "95.32", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000466685.1", "gtdb_species": "s__Campylobacter_A concisus_A", "ani": 78.6154, "matched_fragments": 283, "total_fragments": 648, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.29", "min_intra_species_ani": "95.22", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.86", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_002913225.1", "gtdb_species": "s__Campylobacter_A concisus_J", "ani": 78.5493, "matched_fragments": 282, "total_fragments": 648, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.08", "min_intra_species_ani": "95.08", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004803815.1", "gtdb_species": "s__Campylobacter_A showae", "ani": 78.5442, "matched_fragments": 238, "total_fragments": 648, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014253065.1", "gtdb_species": "s__Campylobacter_A sp014253065", "ani": 78.5086, "matched_fragments": 246, "total_fragments": 648, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900699785.1", "gtdb_species": "s__Campylobacter_A showae_D", "ani": 78.4778, "matched_fragments": 252, "total_fragments": 648, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003048375.1", "gtdb_species": "s__Campylobacter_A concisus_T", "ani": 78.461, "matched_fragments": 281, "total_fragments": 648, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.30", "min_intra_species_ani": "95.13", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 33, "status": "-" }, { "accession": "GCF_003048405.1", "gtdb_species": "s__Campylobacter_A concisus_Q", "ani": 78.4154, "matched_fragments": 246, "total_fragments": 648, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.74", "min_intra_species_ani": "96.49", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003048835.2", "gtdb_species": "s__Campylobacter_A concisus_D", "ani": 78.3638, "matched_fragments": 273, "total_fragments": 648, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A", "ani_circumscription_radius": 95.0092, "mean_intra_species_ani": "97.26", "min_intra_species_ani": "95.33", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_900573985.1", "gtdb_species": "s__Campylobacter_A showae_E", "ani": 78.3417, "matched_fragments": 249, "total_fragments": 648, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015230015.1", "gtdb_species": "s__Campylobacter_A concisus_AF", "ani": 78.3384, "matched_fragments": 282, "total_fragments": 648, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018375265.1", "gtdb_species": "s__Campylobacter_A concisus_AB", "ani": 78.2688, "matched_fragments": 178, "total_fragments": 648, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.35", "min_intra_species_ani": "95.14", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.77", "num_clustered_genomes": 23, "status": "-" }, { "accession": "GCF_003048675.2", "gtdb_species": "s__Campylobacter_A concisus_F", "ani": 78.2625, "matched_fragments": 286, "total_fragments": 648, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A", "ani_circumscription_radius": 95.0092, "mean_intra_species_ani": "95.49", "min_intra_species_ani": "95.08", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 22, "status": "-" }, { "accession": "GCF_004803795.1", "gtdb_species": "s__Campylobacter_A rectus", "ani": 78.1432, "matched_fragments": 224, "total_fragments": 648, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.92", "min_intra_species_ani": "96.44", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_002912895.1", "gtdb_species": "s__Campylobacter_A concisus_G", "ani": 78.1335, "matched_fragments": 236, "total_fragments": 648, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.40", "min_intra_species_ani": "95.36", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000344295.2", "gtdb_species": "s__Campylobacter_A showae_B", "ani": 78.1326, "matched_fragments": 214, "total_fragments": 648, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000313615.1", "gtdb_species": "s__Campylobacter_A showae_A", "ani": 78.1253, "matched_fragments": 239, "total_fragments": 648, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.64", "min_intra_species_ani": "96.14", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_018145735.1", "gtdb_species": "s__Campylobacter_A sp018145735", "ani": 77.6084, "matched_fragments": 149, "total_fragments": 648, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.06", "min_intra_species_ani": "99.05", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" } ] }