{
    "type": "genome",
    "identifier": "GCF_000376445.1",
    "organism": "Haladaptatus paucihalophilus DX253",
    "title": "Haladaptatus paucihalophilus DX253",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000376445.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02441396",
        "wgs_master": "AQXI00000000.1",
        "refseq_category": "na",
        "taxid": "797209",
        "species_taxid": "367189",
        "organism_name": "Haladaptatus paucihalophilus DX253",
        "infraspecific_name": "strain=DX253",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/04/20",
        "asm_name": "ASM37644v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000376445.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/376/445/GCF_000376445.1_ASM37644v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "4317540",
        "genome_size_ungapped": "4317540",
        "gc_percent": "62.000000",
        "replicon_count": "0",
        "scaffold_count": "6",
        "contig_count": "6",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000376445.1-RS_2024_10_21",
        "annotation_date": "2024-10-21",
        "total_gene_count": "4429",
        "protein_coding_gene_count": "4334",
        "non_coding_gene_count": "58",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-04-20",
    "dateModified": "2013-04-20",
    "datePublished": "2013-04-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Haladaptatus paucihalophilus DX253"
        ],
        "sample_taxid": [
            "797209"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "None"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "1.186 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4317540",
        "Number of Sequences": "6",
        "Longest Sequences (bp)": "2950504",
        "N50 (bp)": "2950504",
        "Gap Ratio (%)": "0.000116",
        "GCcontent (%)": "61.8",
        "Number of CDSs": "4338",
        "Average Protein Length": "283.0",
        "Coding Ratio (%)": "85.3",
        "Number of rRNAs": "6",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Haladaptatus paucihalophilus",
                "strain": "strain=DX253",
                "accession": "GCA_000376445.1",
                "taxid": 367189,
                "species_taxid": 367189,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1432,
                "total_fragments": 1436,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Haladaptatus paucihalophilus",
                "strain": "strain=DX253",
                "accession": "GCA_000187225.2",
                "taxid": 367189,
                "species_taxid": 367189,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9908,
                "matched_fragments": 1408,
                "total_fragments": 1436,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Haladaptatus paucihalophilus",
                "strain": "strain=DX253",
                "accession": "GCA_900142335.1",
                "taxid": 367189,
                "species_taxid": 367189,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9885,
                "matched_fragments": 1418,
                "total_fragments": 1436,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Haladaptatus pallidirubidus",
                "strain": "strain=YIM 93656",
                "accession": "GCA_020700235.1",
                "taxid": 1008152,
                "species_taxid": 1008152,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0287,
                "matched_fragments": 775,
                "total_fragments": 1436,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haladaptatus litoreus",
                "strain": "strain=CGMCC 1.7737",
                "accession": "GCA_900156425.1",
                "taxid": 553468,
                "species_taxid": 553468,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0229,
                "matched_fragments": 802,
                "total_fragments": 1436,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haladaptatus cibarius",
                "strain": "strain=D43",
                "accession": "GCA_000710615.1",
                "taxid": 453847,
                "species_taxid": 453847,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8417,
                "matched_fragments": 784,
                "total_fragments": 1436,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natronoarchaeum rubrum",
                "strain": "strain=GX48",
                "accession": "GCA_024494695.1",
                "taxid": 755311,
                "species_taxid": 755311,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0,
                "matched_fragments": 322,
                "total_fragments": 1436,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000376445.1",
                "gtdb_species": "s__Haladaptatus paucihalophilus",
                "ani": 100.0,
                "matched_fragments": 1431,
                "total_fragments": 1436,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haladaptataceae;g__Haladaptatus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.84",
                "min_intra_species_ani": "96.52",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001625445.1",
                "gtdb_species": "s__Haladaptatus sp001625445",
                "ani": 84.5594,
                "matched_fragments": 1047,
                "total_fragments": 1436,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haladaptataceae;g__Haladaptatus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900156425.1",
                "gtdb_species": "s__Haladaptatus litoreus",
                "ani": 80.9987,
                "matched_fragments": 807,
                "total_fragments": 1436,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haladaptataceae;g__Haladaptatus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000710615.1",
                "gtdb_species": "s__Haladaptatus cibarius",
                "ani": 80.843,
                "matched_fragments": 783,
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haladaptataceae;g__Haladaptatus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003298465.1",
                "gtdb_species": "s__Haladaptatus sp003298465",
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                "matched_fragments": 654,
                "total_fragments": 1436,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haladaptataceae;g__Haladaptatus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003369835.1",
                "gtdb_species": "s__Halorussus rarus",
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                "matched_fragments": 503,
                "total_fragments": 1436,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haladaptataceae;g__Halorussus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900113245.1",
                "gtdb_species": "s__Halopelagius inordinatus",
                "ani": 77.5244,
                "matched_fragments": 364,
                "total_fragments": 1436,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halopelagius",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009176545.1",
                "gtdb_species": "s__Salinigranum salinum",
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                "total_fragments": 1436,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Salinigranum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.079,
        "cell_length": 0.079,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 33.167,
        "optimum_ph": 6.25,
        "genome_size": 4301172.5,
        "gc_content": 61.8,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Haladaptatus",
        "paucihalophilus",
        "DX253"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}