{ "type": "genome", "identifier": "GCF_000376985.1", "organism": "Streptococcus henryi DSM 19005", "title": "Streptococcus henryi DSM 19005", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000376985.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441723", "wgs_master": "AQYA00000000.1", "refseq_category": "reference genome", "taxid": "1123304", "species_taxid": "439219", "organism_name": "Streptococcus henryi DSM 19005", "infraspecific_name": "strain=DSM 19005", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/22", "asm_name": "ASM37698v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000376985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/376/985/GCF_000376985.1_ASM37698v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2422509", "genome_size_ungapped": "2422509", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "37", "contig_count": "37", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000376985.1-RS_2024_05_15", "annotation_date": "2024-05-15", "total_gene_count": "2355", "protein_coding_gene_count": "2252", "non_coding_gene_count": "36", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-22", "dateModified": "2013-04-22", "datePublished": "2013-04-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus henryi DSM 19005" ], "sample_taxid": [ "1123304" ], "sample_host_organism": [ "Equus caballus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia" ], "sample_host_location_id": [], "data_size": "0.688 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2422509", "Number of Sequences": "37", "Longest Sequences (bp)": "424185", "N50 (bp)": "147827", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.6", "Number of CDSs": "2293", "Average Protein Length": "302.1", "Coding Ratio (%)": "85.8", "Number of rRNAs": "2", "Number of tRNAs": "28", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus henryi", "strain": "strain=DSM 19005", "accession": "GCA_000376985.1", "taxid": 439219, "species_taxid": 439219, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 787, "total_fragments": 791, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus ruminantium", "strain": "strain=GUT187T", "accession": "GCA_003609975.1", "taxid": 1917441, "species_taxid": 1917441, "relation_to_type": "type", "validated": true, "ani": 80.1168, "matched_fragments": 98, "total_fragments": 791, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus infantarius", "strain": "strain=FDAARGOS_1019", "accession": "GCA_016127275.1", "taxid": 102684, "species_taxid": 102684, "relation_to_type": "type", "validated": true, "ani": 80.071, "matched_fragments": 207, "total_fragments": 791, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus infantarius", "strain": "strain=NCTC13760", "accession": "GCA_900459445.1", "taxid": 102684, "species_taxid": 102684, "relation_to_type": "type", "validated": true, "ani": 79.927, "matched_fragments": 213, "total_fragments": 791, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus infantarius subsp. infantarius", "strain": "strain=ATCC BAA-102", "accession": "GCA_000154985.1", "taxid": 150054, "species_taxid": 102684, "relation_to_type": "type", "validated": true, "ani": 79.9181, "matched_fragments": 214, "total_fragments": 791, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus thermophilus", "strain": "strain=DSM 20617", "accession": "GCA_019972875.1", "taxid": 1308, "species_taxid": 1308, "relation_to_type": "type", "validated": true, "ani": 79.6311, "matched_fragments": 149, "total_fragments": 791, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus equi subsp. ruminatorum", "strain": "strain=CECT 5772", "accession": "GCA_000706805.1", "taxid": 254358, "species_taxid": 1336, "relation_to_type": "type", "validated": true, "ani": 79.5827, "matched_fragments": 87, "total_fragments": 791, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus orisratti", "strain": "strain=DSM 15617", "accession": "GCA_000380105.1", "taxid": 114652, "species_taxid": 114652, "relation_to_type": "type", "validated": true, "ani": 79.5673, "matched_fragments": 265, "total_fragments": 791, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus loxodontisalivarius", "strain": "strain=DSM 27382", "accession": "GCA_016908645.1", "taxid": 1349415, "species_taxid": 1349415, "relation_to_type": "type", "validated": true, "ani": 79.4686, "matched_fragments": 203, "total_fragments": 791, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus downii", "strain": "strain=CECT 9732", "accession": "GCA_004353325.1", "taxid": 1968889, "species_taxid": 1968889, "relation_to_type": "type", "validated": true, "ani": 79.2307, "matched_fragments": 109, "total_fragments": 791, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus gallolyticus subsp. gallolyticus", "strain": "strain=DSM 16831", "accession": "GCA_002000985.1", "taxid": 53354, "species_taxid": 315405, "relation_to_type": "type", "validated": true, "ani": 79.122, "matched_fragments": 247, "total_fragments": 791, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus lutetiensis", "strain": "strain=FDAARGOS_1158", "accession": "GCA_016725165.1", "taxid": 150055, "species_taxid": 150055, "relation_to_type": "type", "validated": true, "ani": 79.1131, "matched_fragments": 216, "total_fragments": 791, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus gallolyticus", "strain": "strain=NCTC13773", "accession": "GCA_900475715.1", "taxid": 315405, "species_taxid": 315405, "relation_to_type": "suspected-type", "validated": true, "ani": 79.1087, "matched_fragments": 245, "total_fragments": 791, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus lutetiensis", "strain": "strain=NCTC13774", "accession": "GCA_900475675.1", "taxid": 150055, "species_taxid": 150055, "relation_to_type": "type", "validated": true, "ani": 79.0964, "matched_fragments": 219, "total_fragments": 791, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus varani", "strain": "strain=FF10", "accession": "GCA_001375655.1", "taxid": 1608583, "species_taxid": 1608583, "relation_to_type": "type", "validated": true, "ani": 78.97, "matched_fragments": 138, "total_fragments": 791, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus toyakuensis", "strain": "strain=TP1632", "accession": "GCA_024346585.1", "taxid": 2819619, "species_taxid": 2819619, "relation_to_type": "type", "validated": true, "ani": 78.9015, "matched_fragments": 123, "total_fragments": 791, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus caballi", "strain": "strain=DSM 19004", "accession": "GCA_000379985.1", "taxid": 439220, "species_taxid": 439220, "relation_to_type": "type", "validated": true, "ani": 78.8845, "matched_fragments": 215, "total_fragments": 791, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vicugnae", "strain": "strain=SL1232", "accession": "GCA_016461705.1", "taxid": 2740579, "species_taxid": 2740579, "relation_to_type": "type", "validated": true, "ani": 78.8642, "matched_fragments": 224, "total_fragments": 791, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus constellatus subsp. constellatus", "strain": "strain=CCUG 24889", "accession": "GCA_023167545.1", "taxid": 184246, "species_taxid": 76860, "relation_to_type": "type", "validated": true, "ani": 78.8623, "matched_fragments": 84, "total_fragments": 791, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus equinus", "strain": "strain=ATCC 9812", "accession": "GCA_000187265.1", "taxid": 1335, "species_taxid": 1335, "relation_to_type": "type", "validated": true, "ani": 78.8305, "matched_fragments": 201, "total_fragments": 791, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus didelphis", "strain": "strain=DSM 15616", "accession": "GCA_000380005.1", "taxid": 102886, "species_taxid": 102886, "relation_to_type": "type", "validated": true, "ani": 78.6829, "matched_fragments": 99, "total_fragments": 791, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pseudoporcinus", "strain": "strain=LQ 940-04", "accession": "GCA_000188035.3", "taxid": 361101, "species_taxid": 361101, "relation_to_type": "type", "validated": true, "ani": 78.5344, "matched_fragments": 102, "total_fragments": 791, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus catagoni", "strain": "strain=99-1/2017", "accession": "GCA_011421425.1", "taxid": 2654874, "species_taxid": 2654874, "relation_to_type": "type", "validated": true, "ani": 78.5137, "matched_fragments": 95, "total_fragments": 791, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pseudoporcinus", "strain": "strain=NCTC13786", "accession": "GCA_900637075.1", "taxid": 361101, "species_taxid": 361101, "relation_to_type": "type", "validated": true, "ani": 78.5003, "matched_fragments": 102, "total_fragments": 791, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus mutans", "strain": "strain=NCTC10449", "accession": "GCA_900475095.1", "taxid": 1309, "species_taxid": 1309, "relation_to_type": "type", "validated": true, "ani": 78.2256, "matched_fragments": 127, "total_fragments": 791, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus mutans", "strain": "strain=ATCC 25175", "accession": "GCA_000347875.1", "taxid": 1309, "species_taxid": 1309, "relation_to_type": "type", "validated": true, "ani": 78.2174, "matched_fragments": 126, "total_fragments": 791, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus mutans", "strain": "strain=DSM 20523", "accession": "GCA_000375505.1", "taxid": 1309, "species_taxid": 1309, "relation_to_type": "type", "validated": true, "ani": 78.1913, "matched_fragments": 122, "total_fragments": 791, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus troglodytae", "strain": "strain=TKU 31", "accession": "GCA_002355215.1", "taxid": 1111760, "species_taxid": 1111760, "relation_to_type": "type", "validated": true, "ani": 77.819, "matched_fragments": 127, "total_fragments": 791, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000376985.1", "gtdb_species": "s__Streptococcus henryi", "ani": 100.0, "matched_fragments": 787, "total_fragments": 791, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.14", "min_intra_species_ani": "98.14", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_000283635.1", "gtdb_species": "s__Streptococcus macedonicus", "ani": 80.2974, "matched_fragments": 232, "total_fragments": 791, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 96.3165, "mean_intra_species_ani": "99.04", "min_intra_species_ani": "98.50", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.83", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_000154985.1", "gtdb_species": "s__Streptococcus infantarius", "ani": 79.9181, "matched_fragments": 214, "total_fragments": 791, "gtdb_taxonomy": 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"d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.43", "min_intra_species_ani": "98.30", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000187265.1", "gtdb_species": "s__Streptococcus equinus", "ani": 78.8518, "matched_fragments": 200, "total_fragments": 791, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.03", "min_intra_species_ani": "95.86", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.87", "num_clustered_genomes": 42, "status": "-" }, { "accession": "GCF_000380005.1", "gtdb_species": "s__Streptococcus didelphis", "ani": 78.6829, "matched_fragments": 99, "total_fragments": 791, "gtdb_taxonomy": 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