{ "type": "genome", "identifier": "GCF_000377005.1", "organism": "Streptococcus minor DSM 17118", "title": "Streptococcus minor DSM 17118", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000377005.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441724", "wgs_master": "AQYB00000000.1", "refseq_category": "reference genome", "taxid": "1123309", "species_taxid": "229549", "organism_name": "Streptococcus minor DSM 17118", "infraspecific_name": "strain=DSM 17118", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/22", "asm_name": "ASM37700v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000377005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/377/005/GCF_000377005.1_ASM37700v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1927889", "genome_size_ungapped": "1927889", "gc_percent": "41.000000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000377005.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "1968", "protein_coding_gene_count": "1893", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-22", "dateModified": "2013-04-22", "datePublished": "2013-04-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus minor DSM 17118" ], "sample_taxid": [ "1123309" ], "sample_host_organism": [ "Canis lupus familiaris" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Belgium" ], "sample_host_location_id": [], "data_size": "0.549 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1927889", "Number of Sequences": "33", "Longest Sequences (bp)": "750005", "N50 (bp)": "218829", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.1", "Number of CDSs": "1890", "Average Protein Length": "296.4", "Coding Ratio (%)": "87.2", "Number of rRNAs": "1", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus minor", "strain": "strain=DSM 17118", "accession": "GCA_000377005.1", "taxid": 229549, "species_taxid": 229549, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 625, "total_fragments": 626, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus entericus", "strain": "strain=DSM 14446", "accession": "GCA_000380025.1", "taxid": 155680, "species_taxid": 155680, "relation_to_type": "type", "validated": true, "ani": 79.8061, "matched_fragments": 74, "total_fragments": 626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oriscaviae", "strain": "strain=HKU75", "accession": "GCA_018137985.1", "taxid": 2781599, "species_taxid": 2781599, "relation_to_type": "type", "validated": true, "ani": 79.4479, "matched_fragments": 172, "total_fragments": 626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ferus", "strain": "strain=NCTC12278", "accession": "GCA_900475025.1", "taxid": 1345, "species_taxid": 1345, "relation_to_type": "type", "validated": true, "ani": 79.1549, "matched_fragments": 86, "total_fragments": 626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus varani", "strain": "strain=FF10", "accession": "GCA_001375655.1", "taxid": 1608583, "species_taxid": 1608583, "relation_to_type": "type", "validated": true, "ani": 78.9765, "matched_fragments": 274, "total_fragments": 626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus suis", "strain": "strain=S735", "accession": "GCA_000294495.1", "taxid": 1307, "species_taxid": 1307, "relation_to_type": "type", "validated": true, "ani": 78.8878, "matched_fragments": 147, "total_fragments": 626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ovis", "strain": "strain=DSM 16829", "accession": "GCA_000380125.1", "taxid": 82806, "species_taxid": 82806, "relation_to_type": "type", "validated": true, "ani": 78.8703, "matched_fragments": 176, "total_fragments": 626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus suis", "strain": "strain=NCTC10234", "accession": "GCA_900475585.1", "taxid": 1307, "species_taxid": 1307, "relation_to_type": "type", "validated": true, "ani": 78.8437, "matched_fragments": 148, "total_fragments": 626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ruminantium", "strain": "strain=GUT187T", "accession": "GCA_003609975.1", "taxid": 1917441, "species_taxid": 1917441, "relation_to_type": "type", "validated": true, "ani": 78.8382, "matched_fragments": 130, "total_fragments": 626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ferus", "strain": "strain=DSM 20646", "accession": "GCA_000372425.1", "taxid": 1345, "species_taxid": 1345, "relation_to_type": "type", "validated": true, "ani": 78.7158, "matched_fragments": 85, "total_fragments": 626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus hillyeri", "strain": "strain=28462", "accession": "GCA_003686955.1", "taxid": 2282420, "species_taxid": 2282420, "relation_to_type": "type", "validated": true, "ani": 78.6941, "matched_fragments": 79, "total_fragments": 626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus henryi", "strain": "strain=DSM 19005", "accession": "GCA_000376985.1", "taxid": 439219, "species_taxid": 439219, "relation_to_type": "type", "validated": true, "ani": 78.6907, "matched_fragments": 97, "total_fragments": 626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus bovimastitidis", "strain": "strain=NZ1587", "accession": "GCA_001885095.1", "taxid": 1856638, "species_taxid": 1856638, "relation_to_type": "type", "validated": true, "ani": 78.6446, "matched_fragments": 65, "total_fragments": 626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus downii", "strain": "strain=CECT 9732", "accession": "GCA_004353325.1", "taxid": 1968889, "species_taxid": 1968889, "relation_to_type": "type", "validated": true, "ani": 78.5591, "matched_fragments": 95, "total_fragments": 626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus equi subsp. ruminatorum", "strain": "strain=CECT 5772", "accession": "GCA_000706805.1", "taxid": 254358, "species_taxid": 1336, "relation_to_type": "type", "validated": true, "ani": 78.5015, "matched_fragments": 54, "total_fragments": 626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus thoraltensis", "strain": "strain=DSM 12221", "accession": "GCA_000380145.1", "taxid": 55085, "species_taxid": 55085, "relation_to_type": "type", "validated": true, "ani": 78.3532, "matched_fragments": 75, "total_fragments": 626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus penaeicida", "strain": "strain=CAIM 1838", "accession": "GCA_002887775.1", "taxid": 1765960, "species_taxid": 1765960, "relation_to_type": "type", "validated": true, "ani": 78.23, "matched_fragments": 63, "total_fragments": 626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus koreensis", "strain": "strain=JS71", "accession": "GCA_003627135.1", "taxid": 2382163, "species_taxid": 2382163, "relation_to_type": "type", "validated": true, "ani": 78.2223, "matched_fragments": 99, "total_fragments": 626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus himalayensis", "strain": "strain=HTS2", "accession": "GCA_001708305.1", "taxid": 1888195, "species_taxid": 1888195, "relation_to_type": "type", "validated": true, "ani": 78.0304, "matched_fragments": 90, "total_fragments": 626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus equinus", "strain": "strain=ATCC 9812", "accession": "GCA_000187265.1", "taxid": 1335, "species_taxid": 1335, "relation_to_type": "type", "validated": true, "ani": 78.0273, "matched_fragments": 78, "total_fragments": 626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus himalayensis", "strain": "strain=CGMCC 1.15533", "accession": "GCA_014643475.1", "taxid": 1888195, "species_taxid": 1888195, "relation_to_type": "type", "validated": true, "ani": 77.9808, "matched_fragments": 88, "total_fragments": 626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ratti", "strain": "strain=FA-1", "accession": "GCA_000286075.1", "taxid": 1341, "species_taxid": 1341, "relation_to_type": "suspected-type", "validated": true, "ani": 77.9579, "matched_fragments": 66, "total_fragments": 626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus plurextorum", "strain": "strain=DSM 22810", "accession": "GCA_000423745.1", "taxid": 456876, "species_taxid": 456876, "relation_to_type": "type", "validated": true, "ani": 77.9089, "matched_fragments": 106, "total_fragments": 626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ratti", "strain": "strain=DSM 20564", "accession": "GCA_000347915.1", "taxid": 1341, "species_taxid": 1341, "relation_to_type": "suspected-type", "validated": true, "ani": 77.7722, "matched_fragments": 58, "total_fragments": 626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus troglodytae", "strain": "strain=TKU 31", "accession": "GCA_002355215.1", "taxid": 1111760, "species_taxid": 1111760, "relation_to_type": "type", "validated": true, "ani": 77.6306, "matched_fragments": 72, "total_fragments": 626, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000377005.1", "gtdb_species": "s__Streptococcus minor", "ani": 100.0, "matched_fragments": 625, "total_fragments": 626, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.19", "min_intra_species_ani": "98.19", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_018137985.1", "gtdb_species": "s__Streptococcus sp018137985", "ani": 79.4327, "matched_fragments": 173, "total_fragments": 626, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004283785.1", "gtdb_species": "s__Streptococcus parasuis", "ani": 79.2162, "matched_fragments": 104, "total_fragments": 626, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.19", "min_intra_species_ani": "96.80", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.77", "num_clustered_genomes": 20, "status": "-" }, { "accession": "GCF_001375655.1", "gtdb_species": "s__Streptococcus varani", "ani": 78.9765, "matched_fragments": 274, "total_fragments": 626, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002964575.1", "gtdb_species": "s__Streptococcus suis_R", "ani": 78.8772, "matched_fragments": 166, "total_fragments": 626, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003609975.1", "gtdb_species": "s__Streptococcus ruminantium", "ani": 78.8382, "matched_fragments": 130, "total_fragments": 626, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.78", "min_intra_species_ani": "98.55", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 24, "status": "-" }, { "accession": "GCF_902702775.1", "gtdb_species": "s__Streptococcus suis_W", "ani": 78.8081, "matched_fragments": 147, "total_fragments": 626, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.2533, "mean_intra_species_ani": "96.52", "min_intra_species_ani": "95.78", "mean_intra_species_af": "0.85", 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78.4951, "matched_fragments": 156, "total_fragments": 626, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.81", "min_intra_species_ani": "98.81", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001937065.1", "gtdb_species": "s__Streptococcus sp001937065", "ani": 78.3015, "matched_fragments": 61, "total_fragments": 626, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002887775.1", "gtdb_species": "s__Streptococcus penaeicida", "ani": 78.23, "matched_fragments": 63, "total_fragments": 626, 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