{ "type": "genome", "identifier": "GCF_000377625.1", "organism": "Prevotella veroralis DSM 19559 = JCM 6290", "title": "Prevotella veroralis DSM 19559 = JCM 6290", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000377625.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441351", "wgs_master": "ARIR00000000.1", "refseq_category": "na", "taxid": "1122993", "species_taxid": "28137", "organism_name": "Prevotella veroralis DSM 19559 = JCM 6290", "infraspecific_name": "strain=DSM 19559", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/23", "asm_name": "ASM37762v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000377625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/377/625/GCF_000377625.1_ASM37762v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2845746", "genome_size_ungapped": "2842435", "gc_percent": "42.000000", "replicon_count": "0", "scaffold_count": "28", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000377625.1-RS_2024_12_23", "annotation_date": "2024-12-23", "total_gene_count": "2405", "protein_coding_gene_count": "2291", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-23", "dateModified": "2013-04-23", "datePublished": "2013-04-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella veroralis DSM 19559 = JCM 6290" ], "sample_taxid": [ "1122993" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Missing" ], "sample_host_location_id": [], "data_size": "0.810 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2845746", "Number of Sequences": "28", "Longest Sequences (bp)": "555004", "N50 (bp)": "211032", "Gap Ratio (%)": "0.116349", "GCcontent (%)": "41.8", "Number of CDSs": "2278", "Average Protein Length": "343.9", "Coding Ratio (%)": "82.6", "Number of rRNAs": "4", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella veroralis", "strain": "strain=DSM 19559", "accession": "GCA_000377625.1", "taxid": 28137, "species_taxid": 28137, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 935, "total_fragments": 937, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella veroralis", "strain": "strain=JCM 6290", "accession": "GCA_000613325.1", "taxid": 28137, "species_taxid": 28137, "relation_to_type": "type", "validated": true, "ani": 99.9377, "matched_fragments": 907, "total_fragments": 937, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella vespertina", "strain": "strain=A2879", "accession": "GCA_009728485.1", "taxid": 2608404, "species_taxid": 2608404, "relation_to_type": "type", "validated": true, "ani": 92.1863, "matched_fragments": 723, "total_fragments": 937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella jejuni", "strain": "strain=DSM 26989", "accession": "GCA_900187995.1", "taxid": 1177574, "species_taxid": 1177574, "relation_to_type": "type", "validated": true, "ani": 80.8767, "matched_fragments": 389, "total_fragments": 937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella histicola", "strain": "strain=JCM 15637", "accession": "GCA_000613925.1", "taxid": 470565, "species_taxid": 470565, "relation_to_type": "type", "validated": true, "ani": 80.6538, "matched_fragments": 341, "total_fragments": 937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella melaninogenica", "strain": "strain=FDAARGOS_1566", "accession": "GCA_020735785.1", "taxid": 28132, "species_taxid": 28132, "relation_to_type": "suspected-type", "validated": true, "ani": 80.586, "matched_fragments": 373, "total_fragments": 937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella melaninogenica", "strain": "strain=ATCC 25845", "accession": "GCA_000144405.1", "taxid": 28132, "species_taxid": 28132, "relation_to_type": "suspected-type", "validated": true, "ani": 80.5053, "matched_fragments": 380, "total_fragments": 937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella scopos", "strain": "strain=DSM 22613", "accession": "GCA_900129535.1", "taxid": 589437, "species_taxid": 589437, "relation_to_type": "type", "validated": true, "ani": 80.4755, "matched_fragments": 346, "total_fragments": 937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella scopos", "strain": "strain=W2052", "accession": "GCA_018127785.1", "taxid": 589437, "species_taxid": 589437, "relation_to_type": "type", "validated": true, "ani": 80.4462, "matched_fragments": 354, "total_fragments": 937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella brunnea", "strain": "strain=A2672", "accession": "GCA_008016795.1", "taxid": 2508867, "species_taxid": 2508867, "relation_to_type": "type", "validated": true, "ani": 79.9964, "matched_fragments": 109, "total_fragments": 937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella illustrans", "strain": "strain=A2931", "accession": "GCA_017426725.1", "taxid": 2800387, "species_taxid": 2800387, "relation_to_type": "type", "validated": true, "ani": 79.5289, "matched_fragments": 77, "total_fragments": 937, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000377625.1", "gtdb_species": "s__Prevotella veroralis", "ani": 100.0, "matched_fragments": 935, "total_fragments": 937, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.76", "min_intra_species_ani": "96.65", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_000257925.1", "gtdb_species": "s__Prevotella sp000257925", "ani": 92.3719, "matched_fragments": 742, "total_fragments": 937, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.40", "min_intra_species_ani": "96.99", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.83", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_000379965.1", "gtdb_species": "s__Prevotella nanceiensis", "ani": 80.9295, "matched_fragments": 74, "total_fragments": 937, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.31", "min_intra_species_ani": "96.77", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.91", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCF_900187995.1", "gtdb_species": "s__Prevotella jejuni", "ani": 80.8864, "matched_fragments": 388, "total_fragments": 937, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.22", "min_intra_species_ani": "96.57", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_000613925.1", "gtdb_species": "s__Prevotella histicola", "ani": 80.6354, "matched_fragments": 342, "total_fragments": 937, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.82", "min_intra_species_ani": "97.59", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", "num_clustered_genomes": 21, "status": "-" }, { "accession": "GCF_018127925.1", "gtdb_species": "s__Prevotella melaninogenica_C", "ani": 80.6133, "matched_fragments": 410, "total_fragments": 937, "gtdb_taxonomy": 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0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Prevotella", "veroralis", "DSM", "19559", "=", "JCM", "6290" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }