{ "type": "genome", "identifier": "GCF_000377685.1", "organism": "Segatella oris DSM 18711 = JCM 12252", "title": "Segatella oris DSM 18711 = JCM 12252", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000377685.1", "bioproject": "PRJNA224116", "biosample": "SAMN02440460", "wgs_master": "ARIU00000000.1", "refseq_category": "na", "taxid": "1122989", "species_taxid": "28135", "organism_name": "Segatella oris DSM 18711 = JCM 12252", "infraspecific_name": "strain=DSM 18711", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/23", "asm_name": "ASM37768v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000377685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/377/685/GCF_000377685.1_ASM37768v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3063215", "genome_size_ungapped": "3061169", "gc_percent": "44.000000", "replicon_count": "0", "scaffold_count": "46", "contig_count": "53", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000377685.1-RS_2025_01_08", "annotation_date": "2025-01-08", "total_gene_count": "2543", "protein_coding_gene_count": "2412", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-23", "dateModified": "2013-04-23", "datePublished": "2013-04-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Segatella oris DSM 18711 = JCM 12252" ], "sample_taxid": [ "1122989" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Missing" ], "sample_host_location_id": [], "data_size": "0.875 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3063215", "Number of Sequences": "46", "Longest Sequences (bp)": "313901", "N50 (bp)": "173440", "Gap Ratio (%)": "0.066793", "GCcontent (%)": "43.8", "Number of CDSs": "2410", "Average Protein Length": "355.5", "Coding Ratio (%)": "83.9", "Number of rRNAs": "2", "Number of tRNAs": "52", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella oris", "strain": "strain=DSM 18711", "accession": "GCA_000377685.1", "taxid": 28135, "species_taxid": 28135, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 998, "total_fragments": 999, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella oris", "strain": "strain=NCTC13071", "accession": "GCA_900637655.1", "taxid": 28135, "species_taxid": 28135, "relation_to_type": "type", "validated": true, "ani": 99.9887, "matched_fragments": 998, "total_fragments": 999, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella oris", "strain": "strain=JCM 12252", "accession": "GCA_000613505.1", "taxid": 28135, "species_taxid": 28135, "relation_to_type": "type", "validated": true, "ani": 99.9414, "matched_fragments": 965, "total_fragments": 999, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella maculosa", "strain": "strain=DSM 19339", "accession": "GCA_000382385.1", "taxid": 439703, "species_taxid": 439703, "relation_to_type": "type", "validated": true, "ani": 81.4046, "matched_fragments": 440, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella salivae", "strain": "strain=DSM 15606", "accession": "GCA_000185845.1", "taxid": 228604, "species_taxid": 228604, "relation_to_type": "type", "validated": true, "ani": 81.3411, "matched_fragments": 566, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella maculosa", "strain": "strain=JCM 15638", "accession": "GCA_000613965.1", "taxid": 439703, "species_taxid": 439703, "relation_to_type": "type", "validated": true, "ani": 81.2878, "matched_fragments": 436, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella oulorum", "strain": "strain=ATCC 43324", "accession": "GCA_900167385.1", "taxid": 28136, "species_taxid": 28136, "relation_to_type": "type", "validated": true, "ani": 80.3429, "matched_fragments": 208, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella oulorum", "strain": "strain=JCM 14966", "accession": "GCA_000613785.1", "taxid": 28136, "species_taxid": 28136, "relation_to_type": "type", "validated": true, "ani": 80.3161, "matched_fragments": 205, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella illustrans", "strain": "strain=A2931", "accession": "GCA_017426725.1", "taxid": 2800387, "species_taxid": 2800387, "relation_to_type": "type", "validated": true, "ani": 79.7311, "matched_fragments": 140, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella phocaeensis", "strain": "strain=SN19", "accession": "GCA_900065875.1", "taxid": 1776388, "species_taxid": 1776388, "relation_to_type": "type", "validated": true, "ani": 78.6104, "matched_fragments": 91, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella oralis", "strain": "strain=DSM 20702", "accession": "GCA_900129435.1", "taxid": 28134, "species_taxid": 28134, "relation_to_type": "type", "validated": true, "ani": 77.9584, "matched_fragments": 82, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900637655.1", "gtdb_species": "s__Prevotella oris", "ani": 99.9887, "matched_fragments": 998, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.96", "min_intra_species_ani": "97.06", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.82", "num_clustered_genomes": 10, "status": "conclusive" }, { "accession": "GCF_900454835.1", "gtdb_species": "s__Prevotella denticola", "ani": 82.4893, "matched_fragments": 116, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.27", "min_intra_species_ani": "97.69", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_000382385.1", "gtdb_species": "s__Prevotella maculosa", "ani": 81.4179, "matched_fragments": 437, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.13", "min_intra_species_ani": "97.00", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000185845.1", "gtdb_species": "s__Prevotella salivae", "ani": 81.3325, "matched_fragments": 567, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.60", "min_intra_species_ani": "96.70", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.87", "num_clustered_genomes": 27, "status": "-" }, { "accession": "GCF_000613785.1", "gtdb_species": "s__Prevotella oulorum", "ani": 80.3089, "matched_fragments": 206, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.00", "min_intra_species_ani": "96.91", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.84", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_003043925.1", "gtdb_species": "s__Prevotella sp003043925", "ani": 79.5825, "matched_fragments": 139, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001262015.1", "gtdb_species": "s__Prevotella fusca", "ani": 79.4828, "matched_fragments": 145, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.97", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001553265.1", "gtdb_species": "s__Prevotella sp001553265", "ani": 79.2016, "matched_fragments": 128, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.33", "min_intra_species_ani": "99.33", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000599605.1", "gtdb_species": "s__Prevotella sp000599605", "ani": 79.0306, "matched_fragments": 187, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.66", "min_intra_species_ani": "96.63", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000177075.1", "gtdb_species": "s__Prevotella buccalis", "ani": 78.7149, "matched_fragments": 83, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.19", "min_intra_species_ani": "95.19", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900199655.1", "gtdb_species": "s__Prevotella sp900199655", "ani": 78.4138, "matched_fragments": 103, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.91", "min_intra_species_ani": "99.91", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018053665.1", "gtdb_species": "s__Prevotella sp018053665", "ani": 78.2915, "matched_fragments": 106, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.38", "min_intra_species_ani": "99.32", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000185145.2", "gtdb_species": "s__Prevotella oralis", "ani": 78.1494, "matched_fragments": 81, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.83", "min_intra_species_ani": "97.13", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_000426585.1", "gtdb_species": "s__Prevotella baroniae", "ani": 77.9174, "matched_fragments": 136, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.79", "min_intra_species_ani": "98.01", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_018054505.1", "gtdb_species": "s__Prevotella sp018054505", "ani": 77.3177, "matched_fragments": 81, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.05", "min_intra_species_ani": "98.05", "mean_intra_species_af": "0.52", "min_intra_species_af": "0.52", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Segatella", "oris", "DSM", "18711", "=", "JCM", "12252" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }