{
    "type": "genome",
    "identifier": "GCF_000378225.1",
    "organism": "Methylophilus methylotrophus DSM 46235 = ATCC 53528",
    "title": "Methylophilus methylotrophus DSM 46235 = ATCC 53528",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000378225.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02440991",
        "wgs_master": "ARJW00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1122236",
        "species_taxid": "17",
        "organism_name": "Methylophilus methylotrophus DSM 46235 = ATCC 53528",
        "infraspecific_name": "strain=ATCC 53528",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/04/23",
        "asm_name": "ASM37822v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000378225.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/378/225/GCF_000378225.1_ASM37822v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2860219",
        "genome_size_ungapped": "2860019",
        "gc_percent": "49.500000",
        "replicon_count": "0",
        "scaffold_count": "14",
        "contig_count": "16",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000378225.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "2735",
        "protein_coding_gene_count": "2673",
        "non_coding_gene_count": "49",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-04-23",
    "dateModified": "2013-04-23",
    "datePublished": "2013-04-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methylophilus methylotrophus DSM 46235 = ATCC 53528"
        ],
        "sample_taxid": [
            "1122236"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.816 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2860219",
        "Number of Sequences": "14",
        "Longest Sequences (bp)": "1347054",
        "N50 (bp)": "414718",
        "Gap Ratio (%)": "0.006992",
        "GCcontent (%)": "49.6",
        "Number of CDSs": "2674",
        "Average Protein Length": "319.7",
        "Coding Ratio (%)": "89.7",
        "Number of rRNAs": "3",
        "Number of tRNAs": "40",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Methylophilus methylotrophus",
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                "relation_to_type": "type",
                "validated": true,
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            },
            {
                "organism_name": "Methylophilus rhizosphaerae",
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                "taxid": 492660,
                "species_taxid": 492660,
                "relation_to_type": "type",
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                "ani": 80.2626,
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                "ani_threshold": 95,
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            },
            {
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                "accession": "GCA_004661485.1",
                "taxid": 2080758,
                "species_taxid": 2080758,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacillus flagellatus",
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                "accession": "GCA_000013705.1",
                "taxid": 405,
                "species_taxid": 405,
                "relation_to_type": "type",
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                "ani": 77.2728,
                "matched_fragments": 56,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacillus rhizosphaerae",
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                "accession": "GCA_900187985.1",
                "taxid": 551994,
                "species_taxid": 551994,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1039,
                "matched_fragments": 83,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methyloradius palustris",
                "strain": "strain=Zm11",
                "accession": "GCA_019703875.1",
                "taxid": 2778876,
                "species_taxid": 2778876,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0325,
                "matched_fragments": 90,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylovorus glucosotrophus",
                "strain": "strain=DSM 6874",
                "accession": "GCA_009858335.1",
                "taxid": 266009,
                "species_taxid": 266009,
                "relation_to_type": "type",
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                "matched_fragments": 124,
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                "status": "below_threshold"
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            {
                "organism_name": "Methylobacillus glycogenes",
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                "accession": "GCA_000617925.1",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Methylovorus mays",
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                "species_taxid": 184077,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 117,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacillus gramineus",
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                "accession": "GCA_020532675.1",
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                "species_taxid": 755169,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8719,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylotenera versatilis",
                "strain": "strain=301",
                "accession": "GCA_000093025.1",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacillus caricis",
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                "accession": "GCA_020532705.1",
                "taxid": 1971611,
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                "relation_to_type": "type",
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                "ani": 76.6087,
                "matched_fragments": 93,
                "total_fragments": 946,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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        "46235",
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}