{ "type": "genome", "identifier": "GCF_000378485.1", "organism": "Flavobacterium rivuli WB 3.3-2 = DSM 21788", "title": "Flavobacterium rivuli WB 3.3-2 = DSM 21788", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000378485.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441333", "wgs_master": "ARKJ00000000.1", "refseq_category": "reference genome", "taxid": "1121895", "species_taxid": "498301", "organism_name": "Flavobacterium rivuli WB 3.3-2 = DSM 21788", "infraspecific_name": "strain=DSM 21788", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/23", "asm_name": "ASM37848v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000378485.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/378/485/GCF_000378485.1_ASM37848v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4489248", "genome_size_ungapped": "4487368", "gc_percent": "39.500000", "replicon_count": "0", "scaffold_count": "23", "contig_count": "26", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000378485.1-RS_2024_04_26", "annotation_date": "2024-04-26", "total_gene_count": "4005", "protein_coding_gene_count": "3925", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-23", "dateModified": "2013-04-23", "datePublished": "2013-04-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium rivuli WB 3.3-2 = DSM 21788" ], "sample_taxid": [ "1121895" ], "sample_host_organism": [], 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"relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1484, "total_fragments": 1485, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium rivuli", "strain": "strain=WB 3.3-2", "accession": "GCA_000769825.1", "taxid": 498301, "species_taxid": 498301, "relation_to_type": "type", "validated": true, "ani": 99.9799, "matched_fragments": 1448, "total_fragments": 1485, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium subsaxonicum", "strain": "strain=WB 4.1-42", "accession": "GCA_000769935.1", "taxid": 426226, "species_taxid": 426226, "relation_to_type": "type", "validated": true, "ani": 80.2911, "matched_fragments": 711, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium subsaxonicum", "strain": "strain=DSM 21790", "accession": "GCA_000422725.1", "taxid": 426226, "species_taxid": 426226, "relation_to_type": "type", "validated": true, "ani": 80.2568, "matched_fragments": 719, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium zepuense", "strain": "strain=ZT4R6", "accession": "GCA_007097145.1", "taxid": 2593302, "species_taxid": 2593302, "relation_to_type": "type", "validated": true, "ani": 79.6239, "matched_fragments": 682, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium akiainvivens", "strain": "strain=DSM 25510", "accession": "GCA_900115875.1", "taxid": 1202724, "species_taxid": 1202724, "relation_to_type": "type", "validated": true, "ani": 78.071, "matched_fragments": 471, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium akiainvivens", "strain": "strain=IK-1", "accession": "GCA_001278115.1", "taxid": 1202724, "species_taxid": 1202724, "relation_to_type": "type", "validated": true, "ani": 78.0534, "matched_fragments": 474, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium alkalisoli", "strain": "strain=XS-5", "accession": "GCA_008000935.1", "taxid": 2602769, "species_taxid": 2602769, "relation_to_type": "type", "validated": true, "ani": 77.7084, "matched_fragments": 287, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium salilacus subsp. salilacus", "strain": "strain=SaA2.12", "accession": "GCA_004634195.1", "taxid": 2545633, "species_taxid": 2898423, "relation_to_type": "type", "validated": true, "ani": 77.5607, "matched_fragments": 300, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium litorale", "strain": "strain=WSW3-B6", "accession": "GCA_019613795.1", "taxid": 2856519, "species_taxid": 2856519, "relation_to_type": "type", "validated": true, "ani": 77.4248, "matched_fragments": 214, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.62, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000378485.1", "gtdb_species": "s__Flavobacterium rivuli", "ani": 100.0, "matched_fragments": 1484, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_000422725.1", "gtdb_species": "s__Flavobacterium subsaxonicum", "ani": 80.2494, "matched_fragments": 720, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003403075.1", "gtdb_species": "s__Flavobacterium sp003403075", "ani": 78.6095, "matched_fragments": 536, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001278115.1", "gtdb_species": "s__Flavobacterium akiainvivens", "ani": 78.0367, "matched_fragments": 475, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": 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"0.91", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.347, "cell_length": 0.243, "doubling_h": 1.271, "growth_tmp": 23.0, "optimum_tmp": 20.0, "optimum_ph": 7.0, "genome_size": 4487456.667, "gc_content": 39.6, "coding_genes": 3154.048, "rRNA16S_genes": 5.145, "tRNA_genes": 58.611, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.333, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "rivuli", "WB", "3.3-2", "=", "DSM", "21788" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }