{ "type": "genome", "identifier": "GCF_000378505.1", "organism": "Modicisalibacter luteus DSM 23508", "title": "Modicisalibacter luteus DSM 23508", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000378505.1", "bioproject": "PRJNA224116", "biosample": "SAMN02440470", "wgs_master": "ARKK00000000.1", "refseq_category": "reference genome", "taxid": "1121943", "species_taxid": "453962", "organism_name": "Modicisalibacter luteus DSM 23508", "infraspecific_name": "strain=DSM 23508", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/23", "asm_name": "ASM37850v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000378505.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/378/505/GCF_000378505.1_ASM37850v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4533090", "genome_size_ungapped": "4531945", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "42", "contig_count": "49", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000378505.1-RS_2024_09_08", "annotation_date": "2024-09-08", "total_gene_count": "4301", "protein_coding_gene_count": "4138", "non_coding_gene_count": "75", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-23", "dateModified": "2013-04-23", "datePublished": "2013-04-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Modicisalibacter luteus DSM 23508" ], "sample_taxid": [ "1121943" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.288 MB", "sample_ph_range": { "min": 59.0, "max": 59.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4533090", "Number of Sequences": "42", "Longest Sequences (bp)": "569234", "N50 (bp)": "288610", "Gap Ratio (%)": "0.025259", "GCcontent (%)": "59.1", "Number of CDSs": "4252", "Average Protein Length": "307.9", "Coding Ratio (%)": "86.6", "Number of rRNAs": "7", "Number of tRNAs": "64", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomonas lutea", "strain": "strain=DSM 23508", "accession": "GCA_000378505.1", "taxid": 453962, "species_taxid": 453962, "relation_to_type": 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"below_threshold" }, { "organism_name": "Halomonas smyrnensis", "strain": "strain=AAD6", "accession": "GCA_000265245.2", "taxid": 720605, "species_taxid": 720605, "relation_to_type": "type", "validated": true, "ani": 78.9551, "matched_fragments": 411, "total_fragments": 1489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ethanolica", "strain": "strain=MCCC 1A11081", "accession": "GCA_021404305.1", "taxid": 2733486, "species_taxid": 2733486, "relation_to_type": "type", "validated": true, "ani": 78.9276, "matched_fragments": 404, "total_fragments": 1489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas denitrificans", "strain": "strain=DSM 18045", "accession": "GCA_003056305.1", "taxid": 370769, "species_taxid": 370769, "relation_to_type": "type", "validated": true, "ani": 78.8979, "matched_fragments": 419, "total_fragments": 1489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas salipaludis", "strain": "strain=WRN001", "accession": "GCA_002286975.1", "taxid": 2032625, "species_taxid": 2032625, "relation_to_type": "type", "validated": true, "ani": 78.8225, "matched_fragments": 469, "total_fragments": 1489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 78.7596, "matched_fragments": 462, "total_fragments": 1489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidivorans", "strain": "strain=MCCC 1A13718", "accession": "GCA_017868935.1", "taxid": 2733488, "species_taxid": 2733488, "relation_to_type": "type", "validated": true, "ani": 78.6001, "matched_fragments": 425, "total_fragments": 1489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas tianxiuensis", "strain": "strain=BC-M4-5", 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