{
    "type": "genome",
    "identifier": "GCF_000378625.1",
    "organism": "Colwellia piezophila ATCC BAA-637",
    "title": "Colwellia piezophila ATCC BAA-637",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000378625.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02440473",
        "wgs_master": "ARKQ00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1265503",
        "species_taxid": "211668",
        "organism_name": "Colwellia piezophila ATCC BAA-637",
        "infraspecific_name": "strain=ATCC BAA-637",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/04/23",
        "asm_name": "ASM37862v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000378625.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/378/625/GCF_000378625.1_ASM37862v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5484375",
        "genome_size_ungapped": "5478526",
        "gc_percent": "39.000000",
        "replicon_count": "0",
        "scaffold_count": "38",
        "contig_count": "50",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000378625.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "4539",
        "protein_coding_gene_count": "4405",
        "non_coding_gene_count": "76",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-04-23",
    "dateModified": "2013-04-23",
    "datePublished": "2013-04-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Colwellia piezophila ATCC BAA-637"
        ],
        "sample_taxid": [
            "1265503"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.551 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5484375",
        "Number of Sequences": "38",
        "Longest Sequences (bp)": "807847",
        "N50 (bp)": "352406",
        "Gap Ratio (%)": "0.106648",
        "GCcontent (%)": "38.9",
        "Number of CDSs": "4494",
        "Average Protein Length": "336.1",
        "Coding Ratio (%)": "82.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "66",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Colwellia piezophila",
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                "accession": "GCA_000378625.1",
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                "species_taxid": 211668,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1810,
                "total_fragments": 1811,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Colwellia marinimaniae",
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                "accession": "GCA_002207865.1",
                "taxid": 1513592,
                "species_taxid": 1513592,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.736,
                "matched_fragments": 920,
                "total_fragments": 1811,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Colwellia demingiae",
                "strain": "strain=ACAM 459",
                "accession": "GCA_007954275.1",
                "taxid": 89401,
                "species_taxid": 89401,
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                "ani": 81.1583,
                "matched_fragments": 830,
                "total_fragments": 1811,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Colwellia ponticola",
                "strain": "strain=OISW-25",
                "accession": "GCA_005885605.1",
                "taxid": 2304625,
                "species_taxid": 2304625,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8314,
                "matched_fragments": 568,
                "total_fragments": 1811,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Colwellia echini",
                "strain": "strain=A3",
                "accession": "GCA_002843355.2",
                "taxid": 1982103,
                "species_taxid": 1982103,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3364,
                "matched_fragments": 496,
                "total_fragments": 1811,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thalassotalea crassostreae",
                "strain": "strain=LPB0090",
                "accession": "GCA_001831495.1",
                "taxid": 1763536,
                "species_taxid": 1763536,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4871,
                "matched_fragments": 144,
                "total_fragments": 1811,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thalassotalea crassostreae",
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                "accession": "GCA_001652445.1",
                "taxid": 1763536,
                "species_taxid": 1763536,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4321,
                "matched_fragments": 141,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella inventionis",
                "strain": "strain=KCTC 42807",
                "accession": "GCA_023283595.1",
                "taxid": 1738770,
                "species_taxid": 1738770,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0841,
                "matched_fragments": 57,
                "total_fragments": 1811,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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            {
                "accession": "GCF_000378625.1",
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                "ani": 100.0,
                "matched_fragments": 1810,
                "total_fragments": 1811,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_013214175.1",
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                "matched_fragments": 1015,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.17",
                "min_intra_species_ani": "95.17",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001440345.1",
                "gtdb_species": "s__Colwellia sp001440345",
                "ani": 82.8344,
                "matched_fragments": 941,
                "total_fragments": 1811,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
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                "matched_fragments": 919,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia",
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                "num_clustered_genomes": 3,
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            },
            {
                "accession": "GCF_000764185.1",
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                "mean_intra_species_ani": "N/A",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia",
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                "num_clustered_genomes": 1,
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            },
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                "accession": "GCF_002836775.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia",
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            {
                "accession": "GCF_007954275.1",
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            },
            {
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            },
            {
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            },
            {
                "accession": "GCA_002733765.1",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.097,
        "cell_length": 0.301,
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        "growth_tmp": 10.0,
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        "range_salinity": null,
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        "mesophilic_range_tmp": 0.0,
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    "_genome_taxon": [
        "Colwellia",
        "piezophila",
        "ATCC",
        "BAA-637"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}