{ "type": "genome", "identifier": "GCF_000379085.1", "organism": "Halomicrobium katesii DSM 19301", "title": "Halomicrobium katesii DSM 19301", "description": "na", "data type": "Genome sequencing and assembly", "organization": "JGI", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000379085.1", "bioproject": "PRJNA224116", "biosample": "SAMN02261322", "wgs_master": "AQZY00000000.1", "refseq_category": "reference genome", "taxid": "1069082", "species_taxid": "437163", "organism_name": "Halomicrobium katesii DSM 19301", "infraspecific_name": "strain=DSM 19301", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/23", "asm_name": "ASM37908v1", "asm_submitter": "JGI", "gbrs_paired_asm": "GCA_000379085.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/379/085/GCF_000379085.1_ASM37908v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "archaea", "genome_size": "3607771", "genome_size_ungapped": "3605861", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000379085.1-RS_2024_10_21", "annotation_date": "2024-10-21", "total_gene_count": "3729", "protein_coding_gene_count": "3538", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-23", "dateModified": "2013-04-23", "datePublished": "2013-04-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Halomicrobium katesii DSM 19301" ], "sample_taxid": [ "1069082" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Chile" ], "sample_host_location_id": [], "data_size": "0.983 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3607771", "Number of Sequences": "2", "Longest Sequences (bp)": "2964157", "N50 (bp)": "2964157", "Gap Ratio (%)": "0.053856", "GCcontent (%)": "65.0", "Number of CDSs": "3620", "Average Protein Length": "284.9", "Coding Ratio (%)": "85.8", "Number of rRNAs": "9", "Number of tRNAs": "48", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomicrobium katesii", "strain": "strain=DSM 19301", "accession": "GCA_000379085.1", "taxid": 437163, "species_taxid": 437163, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1202, "total_fragments": 1202, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Halomicrobium mukohataei", "strain": "strain=DSM 12286", "accession": "GCA_000023965.1", "taxid": 57705, "species_taxid": 57705, "relation_to_type": "type", "validated": true, "ani": 96.817, "matched_fragments": 970, "total_fragments": 1202, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Halomicroarcula salina", "strain": "strain=YGHS18", "accession": "GCA_010119195.1", "taxid": 1429914, "species_taxid": 1429914, "relation_to_type": "type", "validated": true, "ani": 79.6878, "matched_fragments": 556, "total_fragments": 1202, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomicroarcula salina", "strain": "strain=JCM 18369", "accession": "GCA_019061225.1", "taxid": 1429914, "species_taxid": 1429914, "relation_to_type": "type", "validated": true, "ani": 79.6197, "matched_fragments": 562, "total_fragments": 1202, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"GCA_005049285.1", "taxid": 2932266, "species_taxid": 2932266, "relation_to_type": "type", "validated": true, "ani": 78.8048, "matched_fragments": 426, "total_fragments": 1202, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halorientalis pallida", "strain": "strain=F13-25", "accession": "GCA_004118325.1", "taxid": 2479928, "species_taxid": 2479928, "relation_to_type": "type", "validated": true, "ani": 78.5496, "matched_fragments": 438, "total_fragments": 1202, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halorubrum tebenquichense", "strain": "strain=DSM 14210", "accession": "GCA_000337415.1", "taxid": 119434, "species_taxid": 119434, "relation_to_type": "type", "validated": true, "ani": 77.6402, "matched_fragments": 368, "total_fragments": 1202, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halorubrum saccharovorum", "strain": "strain=DSM 1137", "accession": "GCA_000337915.1", "taxid": 2248, "species_taxid": 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"d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halorubrum", "ani_circumscription_radius": 95.2282, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.255, "cell_length": 0.352, "doubling_h": null, "growth_tmp": 40.0, "optimum_tmp": 38.5, "optimum_ph": 7.25, "genome_size": 3607771.0, "gc_content": 65.055, "coding_genes": 3262.667, "rRNA16S_genes": 3.0, "tRNA_genes": 46.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Halomicrobium", "katesii", "DSM", "19301" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }