{ "type": "genome", "identifier": "GCF_000379165.1", "organism": "Teredinibacter turnerae T7902", "title": "Teredinibacter turnerae T7902", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000379165.1", "bioproject": "PRJNA224116", "biosample": "SAMN02256427", "wgs_master": "ARAH00000000.1", "refseq_category": "na", "taxid": "1056820", "species_taxid": "2426", "organism_name": "Teredinibacter turnerae T7902", "infraspecific_name": "strain=T7902", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/23", "asm_name": "ASM37916v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000379165.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/379/165/GCF_000379165.1_ASM37916v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5387817", "genome_size_ungapped": "5383525", "gc_percent": "51.000000", "replicon_count": "0", "scaffold_count": "72", "contig_count": "76", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000379165.1-RS_2024_03_15", "annotation_date": "2024-03-15", "total_gene_count": "4355", "protein_coding_gene_count": "4268", "non_coding_gene_count": "43", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-23", "dateModified": "2013-04-23", "datePublished": "2013-04-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Teredinibacter turnerae T7902" ], "sample_taxid": [ "1056820" ], "sample_host_organism": [ "Lyrodus pedicellatus" ], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], 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1760, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Teredinibacter haidensis", "strain": "strain=Bs08", "accession": "GCA_014211975.1", "taxid": 2731755, "species_taxid": 2731755, "relation_to_type": "type", "validated": true, "ani": 78.0831, "matched_fragments": 137, "total_fragments": 1760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Teredinibacter purpureus", "strain": "strain=Bs12", "accession": "GCA_014217335.1", "taxid": 2731756, "species_taxid": 2731756, "relation_to_type": "type", "validated": true, "ani": 77.45, "matched_fragments": 84, "total_fragments": 1760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Teredinibacter purpureus", "strain": "strain=Bs12", "accession": "GCA_000966245.1", "taxid": 2731756, "species_taxid": 2731756, "relation_to_type": "type", "validated": true, "ani": 77.4475, "matched_fragments": 82, "total_fragments": 1760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharophagus degradans", "strain": "strain=2-40", "accession": "GCA_000013665.1", "taxid": 86304, "species_taxid": 86304, "relation_to_type": "type", "validated": true, "ani": 76.8702, "matched_fragments": 79, "total_fragments": 1760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Teredinibacter franksiae", "strain": "strain=Bsc2", "accession": "GCA_014218805.1", "taxid": 2761453, "species_taxid": 2761453, "relation_to_type": "type", "validated": true, "ani": 76.7689, "matched_fragments": 130, "total_fragments": 1760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinimicrobium alkaliphilum", "strain": "strain=SW121", "accession": "GCA_003259155.1", "taxid": 2202654, "species_taxid": 2202654, "relation_to_type": "type", "validated": true, "ani": 76.6448, "matched_fragments": 52, "total_fragments": 1760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simiduia agarivorans", "strain": 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"GCA_900107725.1", "taxid": 658218, "species_taxid": 658218, "relation_to_type": "type", "validated": true, "ani": 75.9107, "matched_fragments": 58, "total_fragments": 1760, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000379165.1", "gtdb_species": "s__Teredinibacter turnerae", "ani": 100.0, "matched_fragments": 1733, "total_fragments": 1760, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Teredinibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.03", "min_intra_species_ani": "97.55", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.90", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCF_000023025.1", "gtdb_species": "s__Teredinibacter turnerae_B", "ani": 92.4728, "matched_fragments": 1551, "total_fragments": 1760, 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