{
    "type": "genome",
    "identifier": "GCF_000379185.1",
    "organism": "Capnocytophaga cynodegmi DSM 19736",
    "title": "Capnocytophaga cynodegmi DSM 19736",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000379185.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02256428",
        "wgs_master": "ARAI00000000.1",
        "refseq_category": "na",
        "taxid": "926551",
        "species_taxid": "28189",
        "organism_name": "Capnocytophaga cynodegmi DSM 19736",
        "infraspecific_name": "strain=E6447, DSM 19736",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/04/23",
        "asm_name": "ASM37918v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000379185.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/379/185/GCF_000379185.1_ASM37918v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2657104",
        "genome_size_ungapped": "2656699",
        "gc_percent": "34.500000",
        "replicon_count": "0",
        "scaffold_count": "37",
        "contig_count": "39",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000379185.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "2369",
        "protein_coding_gene_count": "2302",
        "non_coding_gene_count": "49",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-04-23",
    "dateModified": "2013-04-23",
    "datePublished": "2013-04-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Capnocytophaga cynodegmi DSM 19736"
        ],
        "sample_taxid": [
            "926551"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "None"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.744 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2657104",
        "Number of Sequences": "37",
        "Longest Sequences (bp)": "256813",
        "N50 (bp)": "129716",
        "Gap Ratio (%)": "0.016860",
        "GCcontent (%)": "34.4",
        "Number of CDSs": "2270",
        "Average Protein Length": "341.7",
        "Coding Ratio (%)": "87.6",
        "Number of rRNAs": "2",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Capnocytophaga cynodegmi",
                "strain": "strain=E6447",
                "accession": "GCA_000379185.1",
                "taxid": 28189,
                "species_taxid": 28189,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 865,
                "total_fragments": 865,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Capnocytophaga canimorsus",
                "strain": "strain=DSM 19204",
                "accession": "GCA_002797785.1",
                "taxid": 28188,
                "species_taxid": 28188,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.9222,
                "matched_fragments": 300,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Capnocytophaga canimorsus",
                "strain": "strain=7120",
                "accession": "GCA_002302565.1",
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                "species_taxid": 28188,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Capnocytophaga canimorsus",
                "strain": "strain=NCTC12242",
                "accession": "GCA_900460905.1",
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                "species_taxid": 28188,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.7004,
                "matched_fragments": 306,
                "total_fragments": 865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Capnocytophaga felis",
                "strain": "strain=KC07070",
                "accession": "GCA_009684755.1",
                "taxid": 2267611,
                "species_taxid": 2267611,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.7324,
                "matched_fragments": 676,
                "total_fragments": 865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Capnocytophaga canis",
                "strain": "strain=CcD38",
                "accession": "GCA_000827555.1",
                "taxid": 1848903,
                "species_taxid": 1848903,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.3239,
                "matched_fragments": 277,
                "total_fragments": 865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium phragmitis",
                "strain": "strain=CGMCC 1.10370",
                "accession": "GCA_900112575.1",
                "taxid": 739143,
                "species_taxid": 739143,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3936,
                "matched_fragments": 57,
                "total_fragments": 865,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000379185.1",
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                "matched_fragments": 865,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.53",
                "min_intra_species_ani": "96.05",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 7,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002302565.1",
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                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.20",
                "min_intra_species_ani": "97.29",
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                "num_clustered_genomes": 15,
                "status": "-"
            },
            {
                "accession": "GCF_002302635.1",
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                "matched_fragments": 704,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.71",
                "min_intra_species_ani": "97.65",
                "mean_intra_species_af": "0.92",
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                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_009684755.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
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                "num_clustered_genomes": 2,
                "status": "-"
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                "accession": "GCF_000827555.1",
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                "mean_intra_species_ani": "98.20",
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                "num_clustered_genomes": 11,
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            },
            {
                "accession": "GCF_004303025.1",
                "gtdb_species": "s__Flavobacterium sp004303025",
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                "matched_fragments": 52,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900112575.1",
                "gtdb_species": "s__Flavobacterium phragmitis",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.388,
        "cell_length": 0.5,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 6.75,
        "genome_size": 2661749.833,
        "gc_content": 34.35,
        "coding_genes": 2240.0,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 45.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Capnocytophaga",
        "cynodegmi",
        "DSM",
        "19736"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}