{
    "type": "genome",
    "identifier": "GCF_000379705.1",
    "organism": "Corynebacterium caspium DSM 44850",
    "title": "Corynebacterium caspium DSM 44850",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000379705.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02256419",
        "wgs_master": "ARBM00000000.1",
        "refseq_category": "na",
        "taxid": "1121355",
        "species_taxid": "234828",
        "organism_name": "Corynebacterium caspium DSM 44850",
        "infraspecific_name": "strain=DSM 44850",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/04/23",
        "asm_name": "ASM37970v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000379705.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/379/705/GCF_000379705.1_ASM37970v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1843677",
        "genome_size_ungapped": "1842962",
        "gc_percent": "49.500000",
        "replicon_count": "0",
        "scaffold_count": "8",
        "contig_count": "10",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000379705.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "1679",
        "protein_coding_gene_count": "1610",
        "non_coding_gene_count": "61",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-04-23",
    "dateModified": "2013-04-23",
    "datePublished": "2013-04-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Corynebacterium caspium DSM 44850"
        ],
        "sample_taxid": [
            "1121355"
        ],
        "sample_host_organism": [
            "Pusa caspica"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.526 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1843677",
        "Number of Sequences": "8",
        "Longest Sequences (bp)": "458708",
        "N50 (bp)": "420966",
        "Gap Ratio (%)": "0.038781",
        "GCcontent (%)": "49.7",
        "Number of CDSs": "1650",
        "Average Protein Length": "334.4",
        "Coding Ratio (%)": "89.8",
        "Number of rRNAs": "2",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Corynebacterium caspium",
                "strain": "strain=DSM 44850",
                "accession": "GCA_000379705.1",
                "taxid": 234828,
                "species_taxid": 234828,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 609,
                "total_fragments": 610,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium callunae",
                "strain": "strain=DSM 20147",
                "accession": "GCA_000420585.1",
                "taxid": 1721,
                "species_taxid": 1721,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.118,
                "matched_fragments": 51,
                "total_fragments": 610,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium callunae",
                "strain": "strain=DSM 20147",
                "accession": "GCA_000344785.1",
                "taxid": 1721,
                "species_taxid": 1721,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0597,
                "matched_fragments": 50,
                "total_fragments": 610,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium renale",
                "strain": "strain=NCTC7448",
                "accession": "GCA_900478035.1",
                "taxid": 1724,
                "species_taxid": 1724,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8996,
                "matched_fragments": 57,
                "total_fragments": 610,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium renale",
                "strain": "strain=DSM 20688",
                "accession": "GCA_002563965.1",
                "taxid": 1724,
                "species_taxid": 1724,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8996,
                "matched_fragments": 57,
                "total_fragments": 610,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.54,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000379705.1",
                "gtdb_species": "s__Corynebacterium caspium",
                "ani": 100.0,
                "matched_fragments": 609,
                "total_fragments": 610,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000344785.1",
                "gtdb_species": "s__Corynebacterium callunae",
                "ani": 77.0597,
                "matched_fragments": 50,
                "total_fragments": 610,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002563965.1",
                "gtdb_species": "s__Corynebacterium renale",
                "ani": 76.8996,
                "matched_fragments": 57,
                "total_fragments": 610,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.02",
                "min_intra_species_ani": "98.07",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.275,
        "cell_length": 0.068,
        "doubling_h": -0.089,
        "growth_tmp": 37.0,
        "optimum_tmp": 34.5,
        "optimum_ph": 7.292,
        "genome_size": 1843319.5,
        "gc_content": 49.7,
        "coding_genes": 2390.094,
        "rRNA16S_genes": 4.282,
        "tRNA_genes": 52.979,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.75,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Corynebacterium",
        "caspium",
        "DSM",
        "44850"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}