{ "type": "genome", "identifier": "GCF_000379845.1", "organism": "Moraxella boevrei DSM 14165", "title": "Moraxella boevrei DSM 14165", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000379845.1", "bioproject": "PRJNA224116", "biosample": "SAMN02256417", "wgs_master": "ARBT00000000.1", "refseq_category": "reference genome", "taxid": "1122243", "species_taxid": "346665", "organism_name": "Moraxella boevrei DSM 14165", "infraspecific_name": "strain=DSM 14165", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/23", "asm_name": "ASM37984v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000379845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/379/845/GCF_000379845.1_ASM37984v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2427214", "genome_size_ungapped": "2427064", "gc_percent": "40.000000", "replicon_count": "0", "scaffold_count": "43", "contig_count": "44", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000379845.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "2382", "protein_coding_gene_count": "2289", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-23", "dateModified": "2013-04-23", "datePublished": "2013-04-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Moraxella boevrei DSM 14165" ], "sample_taxid": [ "1122243" ], "sample_host_organism": [ "Capra hircus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "0.678 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2427214", "Number of Sequences": "43", "Longest Sequences (bp)": "216488", "N50 (bp)": "120582", "Gap Ratio (%)": "0.007128", "GCcontent (%)": "40.1", "Number of CDSs": "2261", "Average Protein Length": "305.7", "Coding Ratio (%)": "85.4", "Number of rRNAs": "5", "Number of tRNAs": "42", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Moraxella boevrei", "strain": "strain=DSM 14165", "accession": "GCA_000379845.1", "taxid": 346665, "species_taxid": 346665, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 789, "total_fragments": 790, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Moraxella ovis", "strain": "strain=NCTC11227", "accession": "GCA_900453105.1", "taxid": 29433, "species_taxid": 29433, "relation_to_type": "type", "validated": true, "ani": 78.9575, "matched_fragments": 109, "total_fragments": 790, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Moraxella bovis", "strain": "strain=CCUG 2133", "accession": "GCA_002014975.1", "taxid": 476, "species_taxid": 476, "relation_to_type": "type", "validated": true, "ani": 78.8666, "matched_fragments": 148, "total_fragments": 790, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Moraxella bovoculi", "strain": "strain=237", "accession": "GCA_000696305.2", "taxid": 386891, "species_taxid": 386891, "relation_to_type": "type", "validated": true, "ani": 78.518, "matched_fragments": 96, "total_fragments": 790, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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