{
    "type": "genome",
    "identifier": "GCF_000379965.1",
    "organism": "Hoylesella nanceiensis DSM 19126 = JCM 15639",
    "title": "Hoylesella nanceiensis DSM 19126 = JCM 15639",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000379965.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02256415",
        "wgs_master": "ARBZ00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1122988",
        "species_taxid": "425941",
        "organism_name": "Hoylesella nanceiensis DSM 19126 = JCM 15639",
        "infraspecific_name": "strain=DSM 19126",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/04/23",
        "asm_name": "ASM37996v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000379965.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/379/965/GCF_000379965.1_ASM37996v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2650108",
        "genome_size_ungapped": "2648555",
        "gc_percent": "38.500000",
        "replicon_count": "0",
        "scaffold_count": "12",
        "contig_count": "13",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000379965.1-RS_2024_04_07",
        "annotation_date": "2024-04-07",
        "total_gene_count": "2068",
        "protein_coding_gene_count": "1986",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-04-23",
    "dateModified": "2013-04-23",
    "datePublished": "2013-04-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Hoylesella nanceiensis DSM 19126 = JCM 15639"
        ],
        "sample_taxid": [
            "1122988"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France"
        ],
        "sample_host_location_id": [],
        "data_size": "0.748 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2650108",
        "Number of Sequences": "12",
        "Longest Sequences (bp)": "771404",
        "N50 (bp)": "750844",
        "Gap Ratio (%)": "0.058828",
        "GCcontent (%)": "38.4",
        "Number of CDSs": "1999",
        "Average Protein Length": "373.6",
        "Coding Ratio (%)": "84.5",
        "Number of rRNAs": "4",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "accession": "GCA_000379965.1",
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                "relation_to_type": "type",
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            },
            {
                "organism_name": "Prevotella nanceiensis",
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                "accession": "GCA_000613985.1",
                "taxid": 425941,
                "species_taxid": 425941,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
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                "accession": "GCA_000613925.1",
                "taxid": 470565,
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella koreensis",
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                "accession": "GCA_003977605.1",
                "taxid": 2490854,
                "species_taxid": 2490854,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 52,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella aurantiaca",
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                "taxid": 596085,
                "species_taxid": 596085,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 90,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella veroralis",
                "strain": "strain=DSM 19559",
                "accession": "GCA_000377625.1",
                "taxid": 28137,
                "species_taxid": 28137,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6408,
                "matched_fragments": 81,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella bivia",
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                "accession": "GCA_000262545.1",
                "taxid": 28125,
                "species_taxid": 28125,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 77,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella veroralis",
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                "validated": true,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella enoeca",
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                "accession": "GCA_000613405.1",
                "taxid": 76123,
                "species_taxid": 76123,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2871,
                "matched_fragments": 68,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella bivia",
                "strain": "strain=JCVIHMP010",
                "accession": "GCA_000177315.1",
                "taxid": 28125,
                "species_taxid": 28125,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1099,
                "matched_fragments": 76,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella bryantii",
                "strain": "strain=B14",
                "accession": "GCA_022024235.1",
                "taxid": 77095,
                "species_taxid": 77095,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella bryantii",
                "strain": "strain=DSM 11371",
                "accession": "GCA_019973295.1",
                "taxid": 77095,
                "species_taxid": 77095,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.775,
                "matched_fragments": 51,
                "total_fragments": 877,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "strain_heterogeneity": 0.0
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                "accession": "GCF_000379965.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
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                "accession": "GCF_000163055.2",
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                "mean_intra_species_ani": "N/A",
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            {
                "accession": "GCF_000185845.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
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                "mean_intra_species_ani": "97.60",
                "min_intra_species_ani": "96.70",
                "mean_intra_species_af": "0.94",
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            {
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": null,
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        "genome_size": null,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": null,
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        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
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    },
    "_genome_taxon": [
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        "nanceiensis",
        "DSM",
        "19126",
        "=",
        "JCM",
        "15639"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}