{ "type": "genome", "identifier": "GCF_000381045.1", "organism": "Thermus scotoductus DSM 8553", "title": "Thermus scotoductus DSM 8553", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000381045.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441334", "wgs_master": "ARLD00000000.1", "refseq_category": "reference genome", "taxid": "1123391", "species_taxid": "37636", "organism_name": "Thermus scotoductus DSM 8553", "infraspecific_name": "strain=DSM 8553", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/24", "asm_name": "ASM38104v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000381045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/381/045/GCF_000381045.1_ASM38104v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2070699", "genome_size_ungapped": "2069303", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "84", "contig_count": "91", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000381045.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "2285", "protein_coding_gene_count": "2107", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-24", "dateModified": "2013-04-24", "datePublished": "2013-04-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Thermus scotoductus DSM 8553" ], "sample_taxid": [ "1123391" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"total_fragments": 647, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Thermus brevis", "strain": "strain=SYSU G05001", "accession": "GCA_019430925.1", "taxid": 2862456, "species_taxid": 2862456, "relation_to_type": "type", "validated": true, "ani": 94.4426, "matched_fragments": 550, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus antranikianii", "strain": "strain=DSM 12462", "accession": "GCA_000423905.1", "taxid": 88190, "species_taxid": 88190, "relation_to_type": "type", "validated": true, "ani": 93.74, "matched_fragments": 548, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus tenuipuniceus", "strain": "strain=YIM 76954", "accession": "GCA_002964845.1", "taxid": 2078690, "species_taxid": 2078690, "relation_to_type": "type", "validated": true, "ani": 92.0865, "matched_fragments": 520, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus caldilimi", "strain": "strain=YIM 78456", "accession": "GCA_004684245.1", "taxid": 2483360, "species_taxid": 2483360, "relation_to_type": "type", "validated": true, "ani": 91.7343, "matched_fragments": 541, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus tengchongensis", "strain": "strain=YIM 77924", "accession": "GCA_021462405.1", "taxid": 1214928, "species_taxid": 1214928, "relation_to_type": "type", "validated": true, "ani": 89.5922, "matched_fragments": 527, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus caldifontis", "strain": "strain=YIM 73026", "accession": "GCA_003336745.1", "taxid": 1930763, "species_taxid": 1930763, "relation_to_type": "type", "validated": true, "ani": 88.2135, "matched_fragments": 526, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus 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"d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000744885.1", "gtdb_species": "s__Thermus amyloliquefaciens", "ani": 88.162, "matched_fragments": 550, "total_fragments": 647, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.176, "doubling_h": 0.103, "growth_tmp": 68.15, "optimum_tmp": 69.125, "optimum_ph": 7.38, "genome_size": 2342602.111, "gc_content": 65.238, "coding_genes": 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